PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_10262-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 233aa MW: 24663.4 Da PI: 9.0805 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.3 | 3.2e-33 | 126 | 184 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg++ prsYY+Ct ++C+v+k++er+++dp++v +tY+g+Hnh+ TRIUR3_10262-P1 126 LDDGYRWRKYGQKVVKGNPRPRSYYKCTAENCNVRKQIERASTDPRCVLTTYTGRHNHD 184 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-34 | 111 | 186 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-28 | 119 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.588 | 121 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.1E-36 | 126 | 185 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-25 | 127 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MADRRGDGMR QQPPYSSGHQ ERVFDGGGGG GGPAFGNDYD PGSSYMSLLG SGVNPQQSLP 60 AQQAWGVDDV APPTINLTPH FSMSMELNGR VAGTFVLISG AGGPAGQRVV KKHKIILQTP 120 SEVDLLDDGY RWRKYGQKVV KGNPRPRSYY KCTAENCNVR KQIERASTDP RCVLTTYTGR 180 HNHDPPGKGA GAAAAAGAGG GSSSDPVPSI VNPSGNTLHQ PSGIHQLKEE NRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-35 | 117 | 187 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-35 | 117 | 187 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363803 | 0.0 | AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197516.1 | 1e-75 | probable WRKY transcription factor 58 | ||||
TrEMBL | M7ZJS1 | 1e-171 | M7ZJS1_TRIUA; Putative WRKY transcription factor 4 | ||||
STRING | TRIUR3_10262-P1 | 1e-172 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2875 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 2e-38 | WRKY DNA-binding protein 4 |