PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10153-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 268aa    MW: 30387.2 Da    PI: 8.071
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10153-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.89.3e-082301341
              TCR 13 ClkkYCeCfaagkkCseeCkCedCkNkee 41
                     C+ +YC Cfa g +Cse+C C  C+Nk++
  TRIUR3_10153-P1  2 CVCRYCPCFAGGGYCSEKCGCVPCFNKSD 30
                     999***********************975 PP
2TCR50.15.6e-1677113339
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedCkN 
  TRIUR3_10153-P1  77 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 113
                      589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011140.0072131IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163426.141115IPR005172CRC domain
PfamPF036382.1E-4228IPR005172CRC domain
SMARTSM011146.5E-1575116IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-1178112IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
ICVCRYCPCF AGGGYCSEKC GCVPCFNKSD FAETVQTTRK VLLSRQKRMS LKINRRLEAN  60
AETMEDAHNS SSSTPPRRGC NCKKSSCLKK YCDCYQDGTG CSLFCRCEDC KNPYGKNEGF  120
MADESKRFIY TGADLDHSED EHDFVVERSP RLQSPISKES SFQHTPPRSK ASSRDTHLLP  180
QVLSQWQARP WAEGPXPSHE WQLAKHQVQE DAYSISRCVQ ILNGMVELSQ VEKSVAPDVF  240
LQPGNREIFV SLGLDVRALW LKRKIQHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678660.0AK367866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2063M24.
GenBankAK3745570.0AK374557.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157750.10.0protein tesmin/TSO1-like CXC 3
TrEMBLT1LYG70.0T1LYG7_TRIUA; Uncharacterized protein
STRINGTRIUR3_10153-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-33TESMIN/TSO1-like CXC 2