PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_10111-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 27016.3 Da PI: 9.3568 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq e Le F+++r++ + ++ LA++lgL+ +qV vWFqNrRa++k TRIUR3_10111-P1 58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQNRRARHK 111 45689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 112 | 3.9e-36 | 58 | 144 | 2 | 88 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kkrrl++eq+++LE sF+ee+kLe+ rKv la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev+ L TRIUR3_10111-P1 58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQNRRARHKSKTLEQEFARLKHAHDAAILHKCHLENEVSLLI 144 9*********************************************************************************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-17 | 48 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.92 | 53 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-16 | 56 | 117 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.0E-16 | 58 | 111 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.82E-15 | 58 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-17 | 58 | 111 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.1E-5 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-5 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDNQQLFGSS YVDTRFFAAN GTAQRESQPK ARRRRRRAAR CGGGDGNGWE MDGGGDPKKR 60 RLTDEQAEML ELSFREERKL ETGRKVYLAA ELGLDPKQVA VWFQNRRARH KSKTLEQEFA 120 RLKHAHDAAI LHKCHLENEV SLLIHTHTGV HTNSSSFLHK LTASQVLRLK EKLRATAEEV 180 QRLRSAAGIH ANGGDSAGAV SVCGGSPGSS FSTGTCQQHP GFSGADVLGR DDDLMMCVPE 240 WFFA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 39 | RRRRRRAAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB490233 | 1e-172 | AB490233.1 Hordeum vulgare subsp. vulgare HvHox2 gene for homeodomain leucine zipper protein class 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176255.1 | 1e-150 | homeobox-leucine zipper protein HOX14-like | ||||
Swissprot | A2YN17 | 8e-63 | HOX14_ORYSI; Homeobox-leucine zipper protein HOX14 | ||||
Swissprot | Q7XI85 | 7e-63 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | M7Z5Q9 | 0.0 | M7Z5Q9_TRIUA; Homeobox-leucine zipper protein HOX14 | ||||
STRING | TRIUR3_10111-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-33 | homeobox protein 40 |
Publications ? help Back to Top | |||
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