PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_09915-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 430aa MW: 47111.7 Da PI: 6.7476

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_09915-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.7	5.4e-54	133	258	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+kkv++ ++ + +++ +d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdk++++ TRIUR3_09915-P1 133 LPPGFRFHPTDEELITHYLAKKVADARFAA-LAVSVADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGKDKDIFR 225 79***********************999.569999*******8778899*********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkg k+ Wvmheyrl TRIUR3_09915-P1 226 -GKALVGMKKTLVFYTGRAPKGDKSGWVMHEYRL 258 .99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-61	128	268	IPR003441	NAC domain
PROSITE profile	PS51005	55.858	133	314	IPR003441	NAC domain
Pfam	PF02365	1.3E-29	134	258	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-61	302	314	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MGSGQPLGSL MPEYPDTQES DTINVDAPEK DVEHIPVLDR KKKRAGFMEE ELSVFSSMTE 60 AVKEVASAIR ESKSVDVHPK LYSAVMDQIV FSPEDLMVAL SHLLDNVGCI DLSVCREKQV 120 MEHGEQEQHA MDLPPGFRFH PTDEELITHY LAKKVADARF AALAVSVADL NKCEPWDLPS 180 LARMGEKEWY FFCLKDRKYP TGLRTNRATE SGYWKATGKD KDIFRGKALV GMKKTLVFYT 240 GRAPKGDKSG WVMHEYRLNA KLHAASTSRG SLSGGRAASS RVATSFHHAT CILLLLVIDH 300 IYLNEWVLCR VFKKSLLGGV VSSAPASSAA KKSGVGTMEE IGSSVAAVTP LPPPLGILGL 360 VRLLESSGYH RGLADDMAPC GNQQQQPAAC KGERERLSAS QDTGLTSDVN PEISSSFGQK 420 FDHEPAPWGY

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MGSGQPLGSL MPEYPDTQES DTINVDAPEK DVEHIPVLDR KKKRAGFMEE ELSVFSSMTE  60
AVKEVASAIR ESKSVDVHPK LYSAVMDQIV FSPEDLMVAL SHLLDNVGCI DLSVCREKQV  120
MEHGEQEQHA MDLPPGFRFH PTDEELITHY LAKKVADARF AALAVSVADL NKCEPWDLPS  180
LARMGEKEWY FFCLKDRKYP TGLRTNRATE SGYWKATGKD KDIFRGKALV GMKKTLVFYT  240
GRAPKGDKSG WVMHEYRLNA KLHAASTSRG SLSGGRAASS RVATSFHHAT CILLLLVIDH  300
IYLNEWVLCR VFKKSLLGGV VSSAPASSAA KKSGVGTMEE IGSSVAAVTP LPPPLGILGL  360
VRLLESSGYH RGLADDMAPC GNQQQQPAAC KGERERLSAS QDTGLTSDVN PEISSSFGQK  420
FDHEPAPWGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-49	131	314	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-49	131	314	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-49	131	314	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-49	131	314	15	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	131	314	18	168	NAC domain-containing protein 19
3swm_B	1e-48	131	314	18	168	NAC domain-containing protein 19
3swm_C	1e-48	131	314	18	168	NAC domain-containing protein 19
3swm_D	1e-48	131	314	18	168	NAC domain-containing protein 19
3swp_A	1e-48	131	314	18	168	NAC domain-containing protein 19
3swp_B	1e-48	131	314	18	168	NAC domain-containing protein 19
3swp_C	1e-48	131	314	18	168	NAC domain-containing protein 19
3swp_D	1e-48	131	314	18	168	NAC domain-containing protein 19
4dul_A	9e-49	131	314	15	165	NAC domain-containing protein 19
4dul_B	9e-49	131	314	15	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP093111	1e-167	FP093111.1 Phyllostachys edulis cDNA clone: bphyem126o09, full insert sequence.
GenBank	FP097753	1e-167	FP097753.1 Phyllostachys edulis cDNA clone: bphyem208n21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168413.1	1e-133	NAC domain-containing protein 92-like
TrEMBL	T1LXU5	0.0	T1LXU5_TRIUA; Uncharacterized protein
STRING	TRIUR3_09915-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-79	NAC domain containing protein 100