PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_09734-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 25705 Da PI: 8.9589 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.6e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ede l+ ++k +G g+Wk ++ + g++R++k+c++rw++yl TRIUR3_09734-P1 13 RGAWTCKEDETLASYIKAHGEGRWKEVPLKAGLRRCGKSCRLRWLNYL 60 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ TRIUR3_09734-P1 66 RGNISDDEEELIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSI 110 7899******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.058 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-27 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-11 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-22 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.29E-8 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.732 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-23 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.79E-11 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MRRACSAKEG VKRGAWTCKE DETLASYIKA HGEGRWKEVP LKAGLRRCGK SCRLRWLNYL 60 RPSIKRGNIS DDEEELIVRL HRLLGNRWSL IAGRLPGRTD NEIKNYWNSI LGRKALPERA 120 ATRVVATPCA SASSGSSTGA STAGLSSNCG AGTSAKAAGL LSSASVWVPK PVRCTGGLFL 180 SGDAPLPAPV TQTRAVGGDG DECSGSSLAA SSGGGDWMDD VRALASFLES DEDWVNSLHM 240 AD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-25 | 11 | 115 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB252146 | 0.0 | AB252146.1 Triticum aestivum Tamyb3 mRNA for myb-related protein, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156277.1 | 1e-134 | anthocyanin regulatory C1 protein-like | ||||
Swissprot | P10290 | 8e-77 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | M7ZR44 | 1e-172 | M7ZR44_TRIUA; Anthocyanin regulatory C1 protein | ||||
STRING | TRIUR3_09734-P1 | 1e-173 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-56 | myb domain protein 5 |