PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_09345-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 346aa    MW: 37137.8 Da    PI: 5.8626
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_09345-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-173279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll  +++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  TRIUR3_09345-P1 32 RGPWTLEEDNLLMSYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 79
                     89********************************************97 PP
2Myb_DNA-binding50.83.8e-1685128146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++ ++++++++G++ W++Ia++++ gRt++++k++w++
  TRIUR3_09345-P1  85 RGNLTAEEQLVILELHAKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 128
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.792779IPR017930Myb domain
SuperFamilySSF466894.12E-3030126IPR009057Homeodomain-like
SMARTSM007172.2E-133181IPR001005SANT/Myb domain
PfamPF002498.3E-153279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-233386IPR009057Homeodomain-like
CDDcd001676.56E-113479No hitNo description
PROSITE profilePS5129425.50380134IPR017930Myb domain
SMARTSM007171.8E-1484132IPR001005SANT/Myb domain
PfamPF002491.3E-1485128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2387133IPR009057Homeodomain-like
CDDcd001677.18E-1289128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSRRKGAAAA GGGGAGPMEM AAMEEEAAEL RRGPWTLEED NLLMSYIACH GEGRWNLLAR  60
CSGLKRTGKS CRLRWLNYLK PDIKRGNLTA EEQLVILELH AKWGNRWSRI AQHLPGRTDN  120
EIKNYWRTRV QKQARQLKVD ANSAVFRDAV RCYWMPRLLD KMSMAAASTA APPPLMEQHG  180
HGVVTSSQSA AIGSDQLCCY PPAGFDPSPS ASTSGSTAAA ALQPAPVPCF SELNWEDQYC  240
YPSGGDLDGG AGGMELDSAA LLGSLGLDGL DLGPAESYLP DATLLDYLNY SSCTANAMNM  300
MVMNGGNYNN SYCGGDAMVD GDHHDPTTAT TCHAARKLAG EWGGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27291334107B-MYB
1gv2_A2e-27291331104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164367.10.0transcription factor MYB108-like
SwissprotQ9C9G74e-77MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A3B6EAR00.0A0A3B6EAR0_WHEAT; Uncharacterized protein
TrEMBLA0A446N2080.0A0A446N208_TRITD; Uncharacterized protein
TrEMBLM7Y9930.0M7Y993_TRIUA; Transcription factor MYB21
STRINGTRIUR3_09345-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-74myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]