PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_09120-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 525aa MW: 59515.4 Da PI: 7.9795 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.7 | 4.3e-18 | 28 | 115 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 t+ d ++++ +v+p +f+ ++ k s t++le ++g++++v + + +++++vl++GW+ Fv+an++ e D+++F++ g+ +f +v vf+ TRIUR3_09120-P1 28 TRMDRHSRHSMVIPERFV-NYfAWK--LSGTIKLEAPNGNVYDVGI--TERRNKTVLRSGWEAFVDANHIVESDSLMFRYRGNCRF--KVVVFD 114 56689999**********.563433..5669***************..999999**************************999999..777777 PP S CS B3 99 k 99 + TRIUR3_09120-P1 115 S 115 5 PP | |||||||
2 | B3 | 31 | 4.6e-10 | 258 | 341 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfrk 99 v+pk++a +h +++t++l+ e++++W +++++ +g++ l + +Fv++n+L egD +vF+ + ++ ++f+ v++frk TRIUR3_09120-P1 258 QVVPKDYALAHFPR--KNQTIKLQLpEQSKKWYCEFRVKSDGGHCSLYD--CGFVRDNHLLEGDLCVFQPMpnRKgRTFKVIVHLFRK 341 489********744..5557888886788****9997777777788885..69****************5532445677777777775 PP | |||||||
3 | B3 | 36.6 | 7.9e-12 | 458 | 515 | 32 | 89 |
--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 32 esktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +++ l+l+ ++++W k+ r k+g+ +++GW +F+++ngL+e+D+++F+l+++ e TRIUR3_09120-P1 458 GGRNLVLQLeGKSQRWHGKM--RDKKGALRISGGWTSFASENGLRERDICLFELMKNkGE 515 334455544246699*****..********************************986333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.63E-21 | 21 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.521 | 23 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.47E-19 | 24 | 114 | No hit | No description |
SMART | SM01019 | 1.7E-9 | 27 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-16 | 28 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 29 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-10 | 233 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-11 | 234 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.922 | 243 | 342 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.06 | 245 | 342 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-8 | 258 | 341 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.65E-10 | 259 | 340 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-14 | 425 | 513 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-15 | 425 | 519 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.79E-12 | 429 | 517 | No hit | No description |
PROSITE profile | PS50863 | 10.602 | 429 | 525 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.014 | 431 | 520 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-9 | 448 | 516 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
IDGDMRNSCE CCKRYWTHLH GKVKRFITRM DRHSRHSMVI PERFVNYFAW KLSGTIKLEA 60 PNGNVYDVGI TERRNKTVLR SGWEAFVDAN HIVESDSLMF RYRGNCRFKV VVFDSSGCEK 120 VFSCAGMLTN ISDQEPSTNS TDISTSFSDG NTHSSARRQS DDCQSGSSGH RRKRAKKDAI 180 SSPSEDSSGE DSPYEHESSE SDGQTLPTPL YVLSGKCYLT EEDDANIVEL VQEIQPEMPL 240 LVAMMRKPIS HSAPFSDQVV PKDYALAHFP RKNQTIKLQL PEQSKKWYCE FRVKSDGGHC 300 SLYDCGFVRD NHLLEGDLCV FQPMPNRKGR TFKVIVHLFR KATIDHPSSE NISKRGLPST 360 KNAPTLCIKE EPNDDEETFS SGHDEHRISK KYLDHDGTEP YMMAMGAELT EVQNKIVLEK 420 VGAIASDLPI YVAVMTKTSV HVSLTFGTEY TARYLRTGGR NLVLQLEGKS QRWHGKMRDK 480 KGALRISGGW TSFASENGLR ERDICLFELM KNKGELKQKM MVYIL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 177 | RRKRAKKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152556.1 | 0.0 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | T1LVR0 | 0.0 | T1LVR0_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_09120-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-15 | B3 family protein |