PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_08978-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 369aa    MW: 40039.7 Da    PI: 4.3691
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_08978-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38e-18104152355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++G+r+++ +g+W+AeIrdps+     r++lg+f +aeeAa+a++  +++++g
  TRIUR3_08978-P1 104 FRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNSAEEAARAYDVEARRIRG 152
                      8*******.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.354103160IPR001471AP2/ERF domain
SMARTSM003801.5E-36103166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-31103161IPR001471AP2/ERF domain
PRINTSPR003671.3E-10104115IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-21104161IPR016177DNA-binding domain
CDDcd000181.10E-31104161No hitNo description
PfamPF008471.4E-10104152IPR001471AP2/ERF domain
PRINTSPR003671.3E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MCGGAILKDL KVPAPARRGG RGLDDGEEDF QADFEEFEAD SGDSDVELGR AGVAGKDGDD  60
EVVEIKPFAA VKRSLSQDDL STMTTAGFDG PAQRSAKRKR KNEFRGIRQR PWGKWAAEIR  120
DPSKGVRVWL GTFNSAEEAA RAYDVEARRI RGKKAKVNFP EEPTVPQKRR ACPAAPKVPK  180
SSVAQEPTVI PAVNNLANPN AFVYPSADFA SKQPLVQPDN MPFVPAINSA ASVEAPVMNM  240
YSDQGSNSFG CSDLGWEYDT KTPDISSIAP ISTIAEGTES AVLQSKTYNP AVIAEGAESA  300
PVQSNTYNSV VPPVMENNAV DFEPWMRFLL DDGVDEPIDS LLNFDVPQDV VGNMDLWSFD  360
DMPICGKIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19102160160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19103160563ATERF1
3gcc_A1e-19103160563ATERF1
5wx9_A7e-191031651477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7110580.0FJ711058.1 Dasypyrum villosum putative ethylene responsive element binding protein (EREBP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194339.10.0ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-148ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A446VR190.0A0A446VR19_TRITD; Uncharacterized protein
TrEMBLM7YUE10.0M7YUE1_TRIUA; Ethylene-responsive transcription factor 1
STRINGTRIUR3_08978-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.22e-35related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]