PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_08913-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-X1 | ||||||||
Protein Properties | Length: 949aa MW: 102804 Da PI: 7.9293 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 16.2 | 2.4e-05 | 201 | 223 | 2 | 18 |
zf-NF-X1 2 G......kHkCqklCHeGpCppC 18 G +H Cq CH+GpC++C TRIUR3_08913-P1 201 GhklacaNHACQDVCHPGPCGEC 223 55555559*************** PP | |||||||
2 | zf-NF-X1 | 18.2 | 5.4e-06 | 264 | 281 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ +CHeG+CppC TRIUR3_08913-P1 264 CGLHRCKGTCHEGECPPC 281 ****************** PP | |||||||
3 | zf-NF-X1 | 16.7 | 1.6e-05 | 469 | 485 | 1 | 17 |
zf-NF-X1 1 CGkHkCqklCHeGpCpp 17 CG H C ++CH+ pC+p TRIUR3_08913-P1 469 CGLHACARPCHPSPCDP 485 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd06008 | 6.12E-5 | 61 | 125 | No hit | No description |
SMART | SM00438 | 0.29 | 87 | 105 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7 | 89 | 104 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.94E-10 | 132 | 180 | No hit | No description |
SMART | SM00438 | 0.0038 | 142 | 161 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0028 | 142 | 159 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.83E-8 | 196 | 239 | No hit | No description |
SMART | SM00438 | 0.0036 | 206 | 225 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0026 | 206 | 223 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.07E-13 | 254 | 302 | No hit | No description |
SMART | SM00438 | 0.001 | 264 | 283 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.0E-5 | 264 | 281 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.09E-7 | 349 | 401 | No hit | No description |
SMART | SM00438 | 0.0043 | 359 | 378 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.044 | 359 | 377 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.49 | 416 | 434 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 120 | 416 | 432 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.05 | 469 | 504 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0029 | 469 | 485 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.5 | 506 | 532 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 4.1 | 513 | 534 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 949 aa Download sequence Send to blast |
MSYVPDWMHK HVLRENVPAR PTKMLVPLSE GDVPARDIAY TCFCRRRRDP PNDLYLTPHS 60 CGEPCSKPLD RADPAAKGDD DDVATRCPHL CVLQCHPGPC PPCKAFAPER PCPCGKQSIT 120 RRCADRITAV TCGQSCEKLL PCGRHHCDKV CHTGPCGECE VDYPALCFCG KKTETLLCGE 180 MVLKGKLSDK DGVFSCSEVC GHKLACANHA CQDVCHPGPC GECELMPAKV TTCHCGKTRL 240 QEKRTSCLDP IATCDKVCDK RLPCGLHRCK GTCHEGECPP CLVRVEQRCR CGSSGQMVEC 300 YKVSKEEFRC NKPCGRKKNC GRHRCSECCC PLSKPFAQHQ GESMDPHFCQ IPCGKKLRCG 360 QHGCQHLCHS GHCDPCRETI FNDLSCACGR SSIPPPQPCG TPTPSCPHQC IVPQPCGHPA 420 SHQCHFGDCP PCVVPVMREC VGGHVMLRNI PCGSKDIRCN QPCGKNRQCG LHACARPCHP 480 SPCDPPPTNG EASSSSGGKV SCGQLCGVPR RECKHTCNAP CHPSSPCPDV RCEHRATITC 540 SCGRISTTVP CSAGGAYNGD STFDISVIQQ LPMPLQPVES NGKRVPLGQR KLCCDEECVK 600 VERKRVLAEA FDITQPNLDA LHFGENSNAS DLVSDLFRRE PKWVLAIEER CKFLVLGKTR 660 GNSSSNMKFH VFCHMMKDKR DAIRLIADRW KLSVQAVGWE PKRFVTVHVT PKSKVPARVL 720 GSKPGVPVSA AHPYFDPMVD MDPRLVVAML DLPRDADVNS LVLRFGGECE LVWLNDKNAA 780 AVFSDPARAA TALRRLDYGS AYQGAAMFCP SSITQASLSS NVWVGAPRDG GLAAVSSASP 840 WKKDSPSELK PNPHAVMTVL GRAPGTSVLG HSPGSVWKPA VQVTSSNRWN ALESDAATSS 900 GSTDKPKPPL RTDTGSSTSA PGVGAEPSAG QSVSKLQPDI EVEDWEEIV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360582 | 0.0 | AK360582.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1121G13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179129.1 | 0.0 | NF-X1-type zinc finger protein NFXL1-like | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | M8AD21 | 0.0 | M8AD21_TRIUA; NF-X1-type zinc finger protein NFXL1 | ||||
STRING | TRIUR3_08913-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |