PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_08744-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 329aa MW: 35786.9 Da PI: 8.1513 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.5 | 8.2e-40 | 103 | 162 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ TRIUR3_08744-P1 103 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSL 162 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-32 | 99 | 160 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-32 | 105 | 161 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.761 | 107 | 161 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 109 | 145 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGQLRAAPGG GGDCLIKLFG KTIPVPDAGA GDVVDKDLQH RGSSATAEPK VQEIAPQDST 60 GSPPQQPEVV DVEDPSAAKN SAADQQDEEQ GDTANQKEKL KKPDKILPCP RCSSMDTKFC 120 YYNNYNINQP RHFCKNCQRY WTAGGAMRNV PVGAGRRKSK SLSAASHFLQ RIRAALPGDP 180 LCTPVNTNGT VLSFGSDAST LDVSEQMKHI KDLSSVTRTE NTDAPCFQSR KHPRDGDEER 240 DTKGNGKVWV PKTIRIDDVD EVARSSIWSL IGIKGDKEEK DDGKGCKLAR VFDPKDEAKT 300 SSHRGNNSLP FLKGNPAALS RSVNFHERS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252924 | 0.0 | AK252924.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174o03, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166390.1 | 1e-149 | cyclic dof factor 1-like | ||||
TrEMBL | M8B0K6 | 0.0 | M8B0K6_TRIUA; Dof zinc finger protein DOF5.5 | ||||
STRING | TRIUR3_08744-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 2e-56 | cycling DOF factor 1 |