PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_08698-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 644aa MW: 72084.1 Da PI: 5.2764

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_08698-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	317.4	3.1e-97	270	640	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 + lLl cA+ v++g+ + a +lL++++++as +gd+ qRla +f+++L+arla+++s++yk+l +++ts + e l+ ++lf ++ + ++++ TRIUR3_08698-P1 270 RGLLLCCAQEVATGNRHGAGNLLKQIRQHASATGDAAQRLAYCFAKGLEARLAGTGSQVYKSLMAKHTS---TMEFLKGYELFMAACSFKRVAF 360 679***********************************************************99999...899*************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 +I +aveg++++Hi+D+++ +G QWp Ll La+R++gpp++RiTg++ p++g +++leetg+ L++ A+++g+pf+f++ +a ++e TRIUR3_08698-P1 361 TFSSMTIFDAVEGKSKLHIVDYGLHYGCQWPGLLAWLATRDGGPPEVRITGIDLPQPGfrPAKRLEETGRALSNCARQFGLPFKFHA-IAAKWE 453 *****************************************************9*************************.799* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +++ e+L+++p+E+l+Vn ++ +l+des+ ++ +rd vL+ +++++++v+v + + ++ Fl+rf eal +ys++fd+l+++ p+es TRIUR3_08698-P1 454 TIRAEDLNIDPDEVLVVNDLFNFNTLMDESLVIDRpsPRDVVLSNIREMQADVFVQGVVNGSS-GPFFLARFREALFFYSSVFDMLDTTTPPES 546 ****************************98877669************999888776.89************************ PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 er ++Er ++g+ + n +ace a+r+er et+++W+ r ++aG++++pl+ ++k a ++ + +++ v+ ++g+l++gWk+r L++ SaW TRIUR3_08698-P1 547 YERFVLERDMFGQCALNTIACESADRVERPETYKQWQLRNQRAGLRQLPLKPIITKVATGKVKSLYHKEFVVDVDQGWLLQGWKGRILYAHSAW 640 **************************************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.637	243	621	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-94	270	640	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MPIAPEELLG LKEHMEPPPP SPSVYLDIPP SPYGGSVGDL VLPYITRMLM EEDIDDRFFY 60 QYPDHLAFLQ AQQQFTQILD DAKNLLSGEG GDMEKMHSDA SLQGIRGGSM CLADKDVPSW 120 TFSDGAEVYN NGDQSKLNRS NEAMLNFAFL KGMEEANKFL PRDNQPQADV FSVDQAKEIF 180 GRSISGGGRK GQRDVDKLEE VVGRASKLLM PELEEDGASE MINKIMLNSY ELCGETMEEL 240 QITMENIRAD RKNKKAVRGK QGKKEAVDLR GLLLCCAQEV ATGNRHGAGN LLKQIRQHAS 300 ATGDAAQRLA YCFAKGLEAR LAGTGSQVYK SLMAKHTSTM EFLKGYELFM AACSFKRVAF 360 TFSSMTIFDA VEGKSKLHIV DYGLHYGCQW PGLLAWLATR DGGPPEVRIT GIDLPQPGFR 420 PAKRLEETGR ALSNCARQFG LPFKFHAIAA KWETIRAEDL NIDPDEVLVV NDLFNFNTLM 480 DESLVIDRPS PRDVVLSNIR EMQADVFVQG VVNGSSGPFF LARFREALFF YSSVFDMLDT 540 TTPPESYERF VLERDMFGQC ALNTIACESA DRVERPETYK QWQLRNQRAG LRQLPLKPII 600 TKVATGKVKS LYHKEFVVDV DQGWLLQGWK GRILYAHSAW VADD

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MPIAPEELLG LKEHMEPPPP SPSVYLDIPP SPYGGSVGDL VLPYITRMLM EEDIDDRFFY  60
QYPDHLAFLQ AQQQFTQILD DAKNLLSGEG GDMEKMHSDA SLQGIRGGSM CLADKDVPSW  120
TFSDGAEVYN NGDQSKLNRS NEAMLNFAFL KGMEEANKFL PRDNQPQADV FSVDQAKEIF  180
GRSISGGGRK GQRDVDKLEE VVGRASKLLM PELEEDGASE MINKIMLNSY ELCGETMEEL  240
QITMENIRAD RKNKKAVRGK QGKKEAVDLR GLLLCCAQEV ATGNRHGAGN LLKQIRQHAS  300
ATGDAAQRLA YCFAKGLEAR LAGTGSQVYK SLMAKHTSTM EFLKGYELFM AACSFKRVAF  360
TFSSMTIFDA VEGKSKLHIV DYGLHYGCQW PGLLAWLATR DGGPPEVRIT GIDLPQPGFR  420
PAKRLEETGR ALSNCARQFG LPFKFHAIAA KWETIRAEDL NIDPDEVLVV NDLFNFNTLM  480
DESLVIDRPS PRDVVLSNIR EMQADVFVQG VVNGSSGPFF LARFREALFF YSSVFDMLDT  540
TTPPESYERF VLERDMFGQC ALNTIACESA DRVERPETYK QWQLRNQRAG LRQLPLKPII  600
TKVATGKVKS LYHKEFVVDV DQGWLLQGWK GRILYAHSAW VADD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-39	276	641	26	379	Protein SCARECROW
5b3h_A	4e-39	276	641	25	378	Protein SCARECROW
5b3h_D	4e-39	276	641	25	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172175.1	0.0	scarecrow-like protein 9
TrEMBL	T1LUM0	0.0	T1LUM0_TRIUA; Uncharacterized protein
STRING	TRIUR3_08698-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-139	GRAS family protein