PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_08696-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 1256aa MW: 140501 Da PI: 6.0872 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 319.8 | 5.6e-98 | 297 | 654 | 2 | 359 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lLl+cA+a+s+++ + a++lL+r++++++p+gd+ qRla+yf+eAL arla+ +sely++l +++ts +++ l+a +l+ ++ + k+++ TRIUR3_08696-P1 297 HTLLLNCAQALSTDNRRTASELLKRIRQHSTPKGDAAQRLAHYFAEALDARLAGRGSELYQSLMARRTS---VADFLKANQLYMAACCCKKVAF 387 679**************************************************************9999...********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + aN++I +av g++r+Hi+D+++sqGlQWp Ll+ La+R++gpp+++iTg++ p++g + +eetg+rL++fA+ +gvpf+f+ +a + e TRIUR3_08696-P1 388 IFANKTICNAVVGKSRLHIVDYGLSQGLQWPGLLRMLAAREGGPPEVKITGIDLPQPGfqGAYHIEETGRRLSNFARVFGVPFKFHG-IAAKRE 480 *********************************************************9989999***********************.69999* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 ++++e+L+++++E+l+V + + l+de++ l+ +rd+vL+ +++++P+v+++ + +++++ Fl+rf eal ysa fd l+a++pr++ TRIUR3_08696-P1 481 TVQPEDLSIDRDEVLVVISLCHFRLLMDENLGLDTpsPRDQVLNNIRKMRPDVFIHGIMNGSYGATYFLTRFREALFNYSAQFDLLDATVPRDN 574 *********************99999999987665559******************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 e r +Er ++gr++ nv+aceg++r+er et+++W+ r ++aG++++pl+ +++ + ++ + + + v+e++ +l+ TRIUR3_08696-P1 575 EGRLLLERDIFGRSALNVIACEGSDRVERPETYKQWQLRNHRAGLRQLPLNPDVVRLVLDKVKDNYHKDFVVDEDQRWLL 654 ***********************************************************9999999888******99985 PP | |||||||
2 | GRAS | 320.1 | 4.5e-98 | 878 | 1247 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL++cA+av + d + a +lL++++++asp+gd++qRla f+e+L+arl++++s++y l+++ ts ++++++a++lf ++ + k+ TRIUR3_08696-P1 878 HTLLIHCAKAVMD-DRRSAGELLKEIKQHASPTGDATQRLAYWFAEGLEARLTGTGSQVYGLLTAECTS---TVRHMQAYQLFMSTCCFRKV 965 679********97.8999******************************************999998888...899***************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 ++l aN+aI +a+ g +r+Hi+D+++ G+QWp Ll+ LasR++gpp++RiT ++ p +g ++ +e++g+rL+++A+elgvpf++++ ++ TRIUR3_08696-P1 966 AFLFANKAIFNAAVGRSRLHIVDYGLHCGFQWPELLRWLASRDGGPPEVRITHIELPLPGvyPEKHMEQIGNRLTDIAQELGVPFKYRA-IM 1056 *********************************************************99999***************************.69 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +++++ +e+L+ +p+EalaVn +++ +l+desv ++s +rd+vL + +++P+v+v + + ++ ++ Fl rf eal y+salfd+l+a TRIUR3_08696-P1 1057 AQWQTICVEDLDKEPDEALAVNDQFNFRTLMDESVVIASpnPRDAVLGNISKMKPDVFVQSTVNGSY-GTFFLSRFREALFYHSALFDMLDA 1147 99*********************************9998889***********************99.789********************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 ++pres+ r +Er ++g+ + n+va eg++r+er et+++W+ r ++aG++++pl+ +++k a ++ + + + ++e++++l++gWk+r TRIUR3_08696-P1 1148 TMPRESKLRLALERDVFGWMVLNAVAYEGEDRVERGETYKHWQIRNQRAGLRQLPLNRETVKMATDMVMGDYHKDFDIDEDHQWLLQGWKGR 1239 *************************************************************99998888877677***************** PP GRAS 366 pLvsvSaW 373 L++ S W TRIUR3_08696-P1 1240 ILYAHSTW 1247 ******** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.018 | 270 | 649 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-95 | 297 | 654 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 55.725 | 851 | 1228 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-95 | 878 | 1247 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 1256 aa Download sequence Send to blast |
MAATPEEFLG QQSFLSRLEP PSPSLFLGLP PTPRGVEDGD SSFDDMALPY ISRLLEEDME 60 DHFFYLYPNH PALLRAQLPF VQILVDVADS ASGSTSALSP SSSTSTFDAT ASTTPSATSP 120 YDAAIQISRP PYAEVLGLAS GSPDTQSSAL LSGDEEAQNP SSDFVIGNYL LPGDQDMLNL 180 AFLKGMEEAR KFLPPNSSLP AMKVDQVVAG VHAGAGLKKK RDTLEPDMGR ASKLMMPEQE 240 EDGARELFDE MMFQEHEICM KGVQQLRVAV DSEPGKNRRK KGRPRRDSSD SEMVDLHTLL 300 LNCAQALSTD NRRTASELLK RIRQHSTPKG DAAQRLAHYF AEALDARLAG RGSELYQSLM 360 ARRTSVADFL KANQLYMAAC CCKKVAFIFA NKTICNAVVG KSRLHIVDYG LSQGLQWPGL 420 LRMLAAREGG PPEVKITGID LPQPGFQGAY HIEETGRRLS NFARVFGVPF KFHGIAAKRE 480 TVQPEDLSID RDEVLVVISL CHFRLLMDEN LGLDTPSPRD QVLNNIRKMR PDVFIHGIMN 540 GSYGATYFLT RFREALFNYS AQFDLLDATV PRDNEGRLLL ERDIFGRSAL NVIACEGSDR 600 VERPETYKQW QLRNHRAGLR QLPLNPDVVR LVLDKVKDNY HKDFVVDEDQ RWLLHRKSFA 660 ITIVIAITKA ATPVFPVFPD LPLMADDDSN CFAVQDHLAL PYITQILMEE EDDVDEDSPA 720 LLKAQRPFAQ ILSSSMHAST LMADQGGALA IDVHSPSSPI FKFKGVDEVH SLMLLPDADY 780 STHMFSIAFL RGMEEANKFL PRNCELTTTG GHDQPKEKSG RGRKDRHGEV EADVSRTSRL 840 VEVGAGEVFD QMLIAHGNET GNSNKKGRKS KTRVVDLHTL LIHCAKAVMD DRRSAGELLK 900 EIKQHASPTG DATQRLAYWF AEGLEARLTG TGSQVYGLLT AECTSTVRHM QAYQLFMSTC 960 CFRKVAFLFA NKAIFNAAVG RSRLHIVDYG LHCGFQWPEL LRWLASRDGG PPEVRITHIE 1020 LPLPGVYPEK HMEQIGNRLT DIAQELGVPF KYRAIMAQWQ TICVEDLDKE PDEALAVNDQ 1080 FNFRTLMDES VVIASPNPRD AVLGNISKMK PDVFVQSTVN GSYGTFFLSR FREALFYHSA 1140 LFDMLDATMP RESKLRLALE RDVFGWMVLN AVAYEGEDRV ERGETYKHWQ IRNQRAGLRQ 1200 LPLNRETVKM ATDMVMGDYH KDFDIDEDHQ WLLQGWKGRI LYAHSTWVAE GASSHC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-44 | 280 | 1248 | 3 | 379 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366442 | 0.0 | AK366442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043B18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172169.1 | 0.0 | scarecrow-like protein 33 | ||||
Refseq | XP_020172170.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | M8AML1 | 0.0 | M8AML1_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_08696-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-123 | GRAS family protein |