PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_08238-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GeBP | ||||||||
Protein Properties | Length: 228aa MW: 25402.9 Da PI: 6.6974 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 43.9 | 6.6e-14 | 39 | 128 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkv.sksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +f+r+ws +De+ +L +l ++++g+ p+ d a+++ + ++++ ++ +++l K+ L++++ +kk g+ skehd+ ++elsk+ TRIUR3_08238-P1 39 AFSRIWSTDDEVRILEALAAHQKQHGTLPQPD--ALVDALAGKLDNRAyGSKELQGKVLALRRRYLALSKK---GEL--PSKEHDRRVLELSKM 125 699***********************887775..8999999999887516889****************99...544..5799*********** PP DUF573 95 iWg 97 +W+ TRIUR3_08238-P1 126 VWE 128 **7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.8E-19 | 40 | 128 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
EEEEGESEEE APPPPKLAPK QAPEGRKPQA AAETKKPAAF SRIWSTDDEV RILEALAAHQ 60 KQHGTLPQPD ALVDALAGKL DNRAYGSKEL QGKVLALRRR YLALSKKGEL PSKEHDRRVL 120 ELSKMVWEGG DMVTAAAASA KSAKAANGQE PKGFEEMCDL YPYLAEHVKE LDAANPGIFK 180 RQFGMMDEDK ARAMDEKIKR QRVAQMKVEL RRHDLVREVT KAIIDLVD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 201 | KIKRQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369153 | 0.0 | AK369153.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085O11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200172.1 | 1e-139 | splicing factor, arginine/serine-rich 19-like | ||||
TrEMBL | A0A3B6NSX2 | 1e-163 | A0A3B6NSX2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VPV3 | 1e-163 | A0A446VPV3_TRITD; Uncharacterized protein | ||||
TrEMBL | T1LTD9 | 1e-163 | T1LTD9_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_08238-P1 | 1e-164 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6729 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-10 | DNA-binding storekeeper protein-related transcriptional regulator |