PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_07949-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 423aa MW: 47471.3 Da PI: 5.3718 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.2e-07 | 262 | 352 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqky 47 +W+ E ++l++++kq + +W+ Ia++ gR++ +c srw++y TRIUR3_07949-P1 262 SWSDTEKDRLAKGIKQQYQEmlikdsmkngsssgdfsavdmayaltnaggnfeatpeilrsvlplvNWDYIAAMYLPGRSGAECESRWLNY 352 699999999999999999889999999999999999999999999999999*********************99888************98 PP | |||||||
2 | Myb_DNA-binding | 25.6 | 2.9e-08 | 360 | 404 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v++ G+++W Ia +g+ Rt+ qc r+q TRIUR3_07949-P1 360 NAWTACEEKRLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 404 68*****************************99**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.307 | 255 | 353 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.27 | 259 | 355 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-11 | 262 | 278 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-11 | 325 | 360 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-17 | 334 | 415 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.191 | 354 | 410 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-4 | 358 | 408 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-10 | 361 | 409 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.9E-7 | 362 | 410 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MAPAPRGLDQ IAQGSARLRT IATTGASAAA SVDLNSDDDS DSEFDEDLQE DLDLEEEDED 60 LALVRSIREN LHLNKASPSS PRPICIWPPS DTEDDEEDGL ETLRAIQRRF SHYHSGETTH 120 DPVLPSSSLE VPGTSTGPLE NMKNEASKEG DDEFIAHRPG EEDVQNKNMK ALTQTGFPKA 180 ALLLVDALKK NRACQKFIRR KMINIEAKIE VNKDLRDRVK CLMDYQLSCR RSFSNFLCHK 240 VDPRVRLISS KKQTAQSAMK HSWSDTEKDR LAKGIKQQYQ EMLIKDSMKN GSSSGDFSAV 300 DMAYALTNAG GNFEATPEIL RSVLPLVNWD YIAAMYLPGR SGAECESRWL NYDDPLINHN 360 AWTACEEKRL ILTVQEKGMH NWINIAVALG TQRTPFQCLA RYQRSLSPHI LKYSSTPKTQ 420 VVD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368554 | 0.0 | AK368554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150877.1 | 0.0 | uncharacterized protein LOC109736068 | ||||
TrEMBL | M7ZP92 | 0.0 | M7ZP92_TRIUA; Myb-like protein L | ||||
STRING | TRIUR3_07949-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 2e-58 | myb domain protein 4r1 |