PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_07751-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 208aa MW: 23083.7 Da PI: 5.8042

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_07751-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.2	2.8e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrr+C+++Cv+ap+f++eq +++fa++hk+FGasn +kll++lp ++r++a+ ++ yeA+ar++dPvyG+v++i++lqqq+ +l+a+ TRIUR3_07751-P1 7 PCGACKFLRRRCVNGCVFAPHFCHEQgAAHFAAIHKVFGASNASKLLTSLPATDRREAAVTISYEAQARQHDPVYGCVAHIFALQQQVVNLQAQ 100 7***********************89**************************************************************** PP DUF260 94 lallkee 100 l++lk++ TRIUR3_07751-P1 101 LESLKAQ 107 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.563	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-37	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MTGFSSPCGA CKFLRRRCVN GCVFAPHFCH EQGAAHFAAI HKVFGASNAS KLLTSLPATD 60 RREAAVTISY EAQARQHDPV YGCVAHIFAL QQQVVNLQAQ LESLKAQEPV QGYTNTCSVS 120 SPEEDSMKAK VMACQTVKIE RESYYGNDAM TSCTSMQYSQ DYNSSHVYTP DYTASFKFND 180 ESIHGSTMFP VDMQDYLQEN GYYDTEGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-33	3	103	7	106	LOB family transfactor Ramosa2.1
5ly0_B	4e-33	3	103	7	106	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615, ECO:0000269\|PubMed:21806801}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182029.1	1e-129	LOB domain-containing protein 14-like
Swissprot	Q5UG13	1e-60	LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBL	M7ZGU3	1e-155	M7ZGU3_TRIUA; Uncharacterized protein
STRING	TRIUR3_07751-P1	1e-156	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	6e-53	LBD family protein

Publications ? help Back to Top
Coudert Y,Périn C,Courtois B,Khong NG,Gantet P Genetic control of root development in rice, the model cereal. Trends Plant Sci., 2010. 15(4): p. 219-26 [PMID:20153971] Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Coudert Y, et al. Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice. BMC Genomics, 2011. 12: p. 387 [PMID:21806801]