PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_07552-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 497aa MW: 54001.1 Da PI: 5.1579

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_07552-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	115	174	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s TRIUR3_07552-P1 115 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKSKNS 174 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	112	172	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-32	117	173	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	119	173	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	121	157	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MSDQMDSGIK LFGREQHKET KDKGDSEMKV DAPEEKEDGG MKGDELRERK DDEMEVDAPQ 60 AKQNAETASS STLDHKKDDQ AQISNAEEKV ASDPKEENEK KSNDESGQDR VLKKPDKIIP 120 CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGSMR NVPVGAGRRK SKNSALHYRQ 180 LLMAPDCLLG SRVDISDTVN PEVLASLPSI PTQSASRNET VLKFGPEVPL CESMVSVLNI 240 EEQNVTNAGS VPRDETREDN SCASTTTSNN GLPANAVPPG QNGAPVYCNG VGPVPQYYLG 300 PPFMYPWSMG WNNLPVMVPG GSMPESASPS ESCSTSSAPW MNSPMMPGSR LPAPPFPYPI 360 VPPALWGCLP SWPAAAWNTP WVGTNGCISP SGSSNSSCSG NGSPTLGKHS RDPNPQKDDK 420 EEKSLWVPKT LRIDDPDEAA KSSIWATLGI KPGDPGVFKP FQFKGESKGQ PADARPARAL 480 QANPAAFSRS QSFQESS

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MSDQMDSGIK LFGREQHKET KDKGDSEMKV DAPEEKEDGG MKGDELRERK DDEMEVDAPQ  60
AKQNAETASS STLDHKKDDQ AQISNAEEKV ASDPKEENEK KSNDESGQDR VLKKPDKIIP  120
CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGSMR NVPVGAGRRK SKNSALHYRQ  180
LLMAPDCLLG SRVDISDTVN PEVLASLPSI PTQSASRNET VLKFGPEVPL CESMVSVLNI  240
EEQNVTNAGS VPRDETREDN SCASTTTSNN GLPANAVPPG QNGAPVYCNG VGPVPQYYLG  300
PPFMYPWSMG WNNLPVMVPG GSMPESASPS ESCSTSSAPW MNSPMMPGSR LPAPPFPYPI  360
VPPALWGCLP SWPAAAWNTP WVGTNGCISP SGSSNSSCSG NGSPTLGKHS RDPNPQKDDK  420
EEKSLWVPKT LRIDDPDEAA KSSIWATLGI KPGDPGVFKP FQFKGESKGQ PADARPARAL  480
QANPAAFSRS QSFQESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189771.1	0.0	cyclic dof factor 2-like
TrEMBL	M8A0X3	0.0	M8A0X3_TRIUA; Dof zinc finger protein DOF5.2
STRING	TRIUR3_07552-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-69	cycling DOF factor 2