PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_07481-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 503aa    MW: 58739.9 Da    PI: 6.0859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_07481-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07169211145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +W++ + +l++++ +q+G++ ++ I + ++  +++ q++ ++ 
  TRIUR3_07481-P1 169 RAKWSKSDTDLFYQGLQQFGSD-FAMIQQLFP-DKSRDQVRQKFK 211
                      569*******************.*********.*********986 PP
2Myb_DNA-binding21.94.1e-07357399145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +W++ + +l++++ +q+G++ ++ I + ++  +++ q++ ++ 
  TRIUR3_07481-P1 357 RAKWSKSDTDLFYQGLQQFGSN-FAMIQQLFP-DKSRDQVRQKFK 399
                      569*****************99.*********.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159634.3E-25162243No hitNo description
Gene3DG3DSA:1.10.10.604.5E-4167215IPR009057Homeodomain-like
PROSITE profilePS512939.7167218IPR017884SANT domain
SMARTSM007179.2E-8168216IPR001005SANT/Myb domain
CDDcd001671.38E-4171212No hitNo description
SuperFamilySSF466898.97E-10171218IPR009057Homeodomain-like
PfamPF159632.9E-24350431No hitNo description
PROSITE profilePS512939.691355406IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.0E-4355403IPR009057Homeodomain-like
SMARTSM007178.0E-8356404IPR001005SANT/Myb domain
CDDcd001671.13E-4359400No hitNo description
SuperFamilySSF466899.72E-10359406IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAFLVWVSLA SFSNHSRMFR RISNRSELPE KKQQKNKSEV SSPGRKRAMK DKLTERTDKK  60
LTHRIRQKRT KVSEVKTLLE KPDHEIAHMK LSVMHLRLLQ EARERIKSKT ILSGPSSSNQ  120
SNSQFGDTNS FDPFEENYEE NYDNDRRENH VLENATKLNY HSYMNKQTRA KWSKSDTDLF  180
YQGLQQFGSD FAMIQQLFPD KSRDQVRQKF KTEEKKHPMQ VHDAILHRSR DTLYLKQVIK  240
QLNIEDLQRG MSSTHKQEVA SIEGDTGNED FIEEVENGSN WSDKELGTRQ SEVREGEHVS  300
GNADDDLDLD VFDCSQFGGT DTFDPFGENY DNDRIENHVL ENATKLNYYS YMNKQTRAKW  360
SKSDTDLFYQ GLQQFGSNFA MIQQLFPDKS RDQVRQKFKT EEKKHPMQVH DAILHRSRDT  420
LYLKQVIKQL NIEDLQRGMN SAQKQEVGSI EGDTGNEDFI KEEENGSNWS DKELATRQSE  480
AREGEHVSGN ADDDLDLDVF DWY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2500790.0AK250079.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf66i09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174330.11e-156transcription factor TFIIIB component B''-like isoform X2
TrEMBLM8A9S70.0M8A9S7_TRIUA; Transcription factor TFIIIB component B
STRINGTRIUR3_07481-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-30MYB_related family protein