PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_07163-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 251aa    MW: 27441.6 Da    PI: 6.5645
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_07163-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-1981134356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++++eq + Le  F+k+r++ + ++ +LA++lgL+++qV vWFqNrRa++k
  TRIUR3_07163-P1  81 KKRRLSDEQAQFLEMNFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYK 134
                      45689************************************************9 PP
2HD-ZIP_I/II110.89.5e-3681172293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      kkrrls+eq+++LE++F++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n+rLe+e  +L+e+l+e
  TRIUR3_07163-P1  81 KKRRLSDEQAQFLEMNFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYKSKLIEEEFSKLRAAHDAVVVHNCRLEAELLRLKERLAE 172
                      9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.63376136IPR001356Homeobox domain
SMARTSM003893.1E-1579140IPR001356Homeobox domain
SuperFamilySSF466892.17E-1680143IPR009057Homeodomain-like
CDDcd000868.74E-1681136No hitNo description
PfamPF000461.6E-1681134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-1681134IPR009057Homeodomain-like
PRINTSPR000315.8E-6107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000315.8E-6116132IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSSEEGERLL FPSFVFPDSF PADDATPVVS GARSSVQPQC AVADSQVNGA GGEQKKAGRQ  60
RRRRRARQAA SGEGGGDDAA KKRRLSDEQA QFLEMNFRKE RKLETPRKVQ LAAELGLDTK  120
QVAVWFQNRR ARYKSKLIEE EFSKLRAAHD AVVVHNCRLE AELLRLKERL AETEEEKNKA  180
MAAAAAATGG GGGSSPSSSS FSTVTAMVGG QQFGMEEVET DLTYMSEYAY TNYMMDLAAG  240
GYLGGVYDQF S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16283RRRARQAASGEGGGDDAAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652950.0AK365295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033D08.
GenBankAK3702530.0AK370253.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107J20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157992.11e-108homeobox-leucine zipper protein HOX12-like
SwissprotQ10QF23e-81HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLM7ZD070.0M7ZD07_TRIUA; Homeobox-leucine zipper protein HOX12
STRINGTRIUR3_07163-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-29homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]