PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_07002-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 416aa    MW: 45611.7 Da    PI: 6.1396
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_07002-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.78.2e-23166224871
          E2F_TDP   8 lltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       lt+kf++ll+++e+gi++ln+va+ L    v  k+RRiYDi+NVLe+++l+ekk kn+irw+g
  TRIUR3_07002-P1 166 ELTKKFISLLKQAEDGILDLNHVAEIL---VV--KKRRIYDITNVLEGIGLLEKKLKNRIRWRG 224
                      79*************************...88..9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-23165226IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.1E-25165224IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.1E-21166224IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-14166222IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd146601.84E-42234340No hitNo description
SuperFamilySSF1440742.2E-30235340No hitNo description
PfamPF164211.8E-29239338IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MPGRVGPAPL LAETRSGGGR PQAGQQIVQS VQKCVPLAPE RPPFAVPAEY HRFPLPPSSS  60
APAAASRGSA GGDVEEGIVI RMPLKRKAPC GESDAIESTE WMITSPGFTE GVSSPHMTPV  120
SGKAARTYKS KAKGSKDGLQ TPISNAGTFT CRSAAYSLSR RELPGELTKK FISLLKQAED  180
GILDLNHVAE ILVVKKRRIY DITNVLEGIG LLEKKLKNRI RWRGLDDSGA NLDNEFSVLE  240
TELENLKLQE KALDNRISEM HEKVRELTEE ENNQRWLYLT EDDIKGLPCF QNETLIAIKA  300
PHGTTLEVPD PDEAGDYVQR RYTIVIRSTM GSIDLYLVSK FEENMEELVG VTTPPRHANV  360
AEPASTDGFI ATEAGQSSRS KDKLPNIQHI HKTPDLNAQN FGGMAKITPE FDVSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-191652251374PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3724420.0AK372442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3002B23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167678.10.0transcription factor E2FA-like isoform X1
RefseqXP_020167679.10.0transcription factor E2FA-like isoform X2
TrEMBLM8A7N20.0M8A7N2_TRIUA; Transcription factor E2FA
STRINGTRIUR3_07002-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-93E2F transcription factor 3