PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_06898-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 794aa    MW: 86145.8 Da    PI: 6.5506
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_06898-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-183289457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+++Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  TRIUR3_06898-P1 32 YVRYTPEQVDALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 89
                     6789****************************************************97 PP
2START253.9e-09181238259
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHH CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvla 59 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++
  TRIUR3_06898-P1 181 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT 238
                      68999************************************************98876 PP
3START113.43.3e-3624436688204
                      T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
            START  88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                      g  g+++l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl+++
  TRIUR3_06898-P1 244 GngGTIELIYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQATGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAW 337
                      445****************999*****************************999999************************************* PP

                      XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
            START 176 lphwllrslvksglaegaktwvatlqrqc 204
                      +++++lr+l++s  + ++k++ a+l++ +
  TRIUR3_06898-P1 338 SVPEVLRPLYESPKILAQKMTIAALRHIR 366
                      ************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3212690IPR001356Homeobox domain
SMARTSM003892.6E-152894IPR001356Homeobox domain
SuperFamilySSF466899.84E-173093IPR009057Homeodomain-like
CDDcd000863.69E-163191No hitNo description
PfamPF000461.0E-153289IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-183389IPR009057Homeodomain-like
CDDcd146862.19E-683122No hitNo description
PROSITE profilePS5084820.511163349IPR002913START domain
SMARTSM002344.7E-31180368IPR002913START domain
SuperFamilySSF559613.3E-31181369No hitNo description
PfamPF018522.2E-6181239IPR002913START domain
PfamPF018521.5E-33244366IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-16247349IPR023393START-like domain
PfamPF086707.2E-29693792IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MVVHGSGGGG DRDRDRSSPG GSGAPQVDTG KYVRYTPEQV DALERVYSEC PKPSSLRRQQ  60
LIRECPILSN IEPKQIKVWF QNRRCREKQR KEASRLQTVN RKLSAMNKLL MEENDRLQKQ  120
VSRLVYENGY MRTHLNNPSV ATTDTSCESV VTSGQHQQQQ QNAVVPRPQR DANNPAGLLA  180
IAEETLAEFL SKATGTAVDW VQMVGMKPGP DSIGIIAVSH NCSGVAARAC GLVSLEPTKI  240
IPTGNGGTIE LIYMQTYAPT TLAAPRDFWI LRYTSGLEDG SLVICERSLT QATGGPSGPN  300
TPNFVRAEVL PSGYLIRPCE GGGSMIHIVD HVDLDAWSVP EVLRPLYESP KILAQKMTIA  360
ALRHIRQIAH ESSGEMPYGG GRQPAVLRTF SQRLSRGFND AVNGFLDDGW SLMSSDGAED  420
VTIAINSSPN KLAGSHVNPS QMFTAIGGGV LCAKASMLLQ NVPPALLVRF LREHRSEWAD  480
PGVDAYSAAA LRASPYAVPG LRASGFMGSQ VILPLAHTLE HEEFLEVIRL EGHSLCHDEV  540
VLSRDMYLLQ LCSGVDENAA GACAQLVFAP IDESFADDAP LLPSGFRVIP LDAKTDAPSA  600
TRTLDLASTL EVGPGGTRAP SDTSSTSNTR SVLTIAFQFS YENHLRESVA AMARQYVRTV  660
VASVQRVAMA IAPSRPGGQL EMKNPPGSPE AHTLARWIGR SYRFHTGAEL LCTESQSADA  720
SLKALWQHSD SIMCCSLKAA PVFTFANQAG LDMLETTLIA LQDISLEKIL DDDGRKALCS  780
EFPKIMQQHY MATV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3642150.0AK364215.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022L20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192001.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLM7ZZS70.0M7ZZS7_TRIUA; Homeobox-leucine zipper protein HOX32
STRINGTRIUR3_06898-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]