PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_06177-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 677aa MW: 73511.3 Da PI: 4.5723

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_06177-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	64.2	2.6e-20	367	454	1	91
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++ L++cA+av++gd + a++lL ++++++ p+gd++qRla++f+e+L+arla+++s++y++l +++ts ++e l+a+klf ++ + TRIUR3_06177-P1 367 LRTMLIHCAQAVAAGDRRGATELLRQIKQHSGPTGDATQRLAHCFAEGLEARLAGTGSQVYQSLVAKRTS---VVEFLKAYKLFMAACCFK 454 5789*************************************************************999...**********999665 PP
2	GRAS	120.8	1.7e-37	457	617	164	322
GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesF 253 + + A+elgvpf+f+ va ++++++ e+Lr++p+E+l+V+++ l +l+d+sv+++ +rd vL+ +++++P+v+v + + ++++ F TRIUR3_06177-P1 457 NFGSCARELGVPFKFHG-VAAKWDTVRGEDLRIDPDEVLVVHCQCGLRNLMDDSVAVTTssssPRDVVLRNIRDMKPDVFVECVANGGYGAPFF 549 55678**********.799**************************9998765545669************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 ++rf eal +ysa fd l+a++pr+++er ++Er l+gr + nv+acega+r+ + ++kW++ +++a TRIUR3_06177-P1 550 VTRFREALFFYSAHFDILDATIPRDNDERLMIERDLIGRGALNVIACEGADRVL-TGGVKKWSDIISTA 617 ************************************************765.5669999988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	11.059	341	451	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.0E-18	367	454	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.8E-35	457	617	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	15.174	462	656	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MDEEFSPLSP SLFLDLPPTP PPAADVDLDF ISRMLMEEDI DDKFFYQYPD QPAILDAQRP 60 YQQIISDTTT TSSGSPNGTT SSCSPNGTTF SDGNAMSSSN AATSSSEETN NFSWPYDPLE 120 LSQLLRSPPY LDDMLFGGLV PDSPADEDTR NSFVADAPAA GFQQSPPQFK GAANGAGAFF 180 GQNGGSPGTQ SSAVLNGPAE EKEAERKPAM FSAGDGGQGG LLSAFFSNGG DMDMLNSACL 240 KGMEEANKFL PTNNTLLEAI PGKEKERGFI VKKEEAANGT PTSGNGRRGR KYRYEEDDLD 300 AETARSSKLM MPDSEETGAR EMFDEIMLEG YETCMRGIEE LRLAMDSEAK KKNGKAARAK 360 KSEVVDLRTM LIHCAQAVAA GDRRGATELL RQIKQHSGPT GDATQRLAHC FAEGLEARLA 420 GTGSQVYQSL VAKRTSVVEF LKAYKLFMAA CCFKKANFGS CARELGVPFK FHGVAAKWDT 480 VRGEDLRIDP DEVLVVHCQC GLRNLMDDSV AVTTSSSSPR DVVLRNIRDM KPDVFVECVA 540 NGGYGAPFFV TRFREALFFY SAHFDILDAT IPRDNDERLM IERDLIGRGA LNVIACEGAD 600 RVLTGGVKKW SDIISTASTA VGLDGMAQRD LGDGCAQDGC DVSRRGTTRS RLKDGMSSWI 660 DNARIIIELY HFLPSDF

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MDEEFSPLSP SLFLDLPPTP PPAADVDLDF ISRMLMEEDI DDKFFYQYPD QPAILDAQRP  60
YQQIISDTTT TSSGSPNGTT SSCSPNGTTF SDGNAMSSSN AATSSSEETN NFSWPYDPLE  120
LSQLLRSPPY LDDMLFGGLV PDSPADEDTR NSFVADAPAA GFQQSPPQFK GAANGAGAFF  180
GQNGGSPGTQ SSAVLNGPAE EKEAERKPAM FSAGDGGQGG LLSAFFSNGG DMDMLNSACL  240
KGMEEANKFL PTNNTLLEAI PGKEKERGFI VKKEEAANGT PTSGNGRRGR KYRYEEDDLD  300
AETARSSKLM MPDSEETGAR EMFDEIMLEG YETCMRGIEE LRLAMDSEAK KKNGKAARAK  360
KSEVVDLRTM LIHCAQAVAA GDRRGATELL RQIKQHSGPT GDATQRLAHC FAEGLEARLA  420
GTGSQVYQSL VAKRTSVVEF LKAYKLFMAA CCFKKANFGS CARELGVPFK FHGVAAKWDT  480
VRGEDLRIDP DEVLVVHCQC GLRNLMDDSV AVTTSSSSPR DVVLRNIRDM KPDVFVECVA  540
NGGYGAPFFV TRFREALFFY SAHFDILDAT IPRDNDERLM IERDLIGRGA LNVIACEGAD  600
RVLTGGVKKW SDIISTASTA VGLDGMAQRD LGDGCAQDGC DVSRRGTTRS RLKDGMSSWI  660
DNARIIIELY HFLPSDF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161472.1	0.0	scarecrow-like protein 34
TrEMBL	M7Z591	0.0	M7Z591_TRIUA; Uncharacterized protein
STRING	TRIUR3_06177-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	5e-40	GRAS family protein