PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_05951-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 644aa MW: 71951.7 Da PI: 5.2547

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_05951-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	315.6	1.1e-96	269	640	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL++cAeav+s+d a++lL+r++ ++sp+gd+ qRla+yf+++L+arla+++s+ly++l ++ts +e + a+ l +s +k++ TRIUR3_05951-P1 269 ETLLTRCAEAVASSDVCGASKLLERIKCHSSPRGDARQRLAHYFAQGLEARLAGTGSRLYRSLMGKRTS---AVELIRAYYLHTAASCSIKVGL 359 689**********************************************************999998...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 l ++I++av+g +++Hi+ ++is G+QWp Ll+ La+R++gpp++ iTg++ p++g + +e+ g+rL++ A++lgvpf+f++ +a++le TRIUR3_05951-P1 360 LFSTNTIYKAVAGRRKLHIVHYGISTGFQWPDLLRLLANREGGPPEVTITGINTPQPGpcPAALMEQAGDRLSNCASQLGVPFKFRA-IASKLE 452 ******************************************************999999*******************.7* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 d++ e+L+++p+E+l+V++ ++ +l+des++ + +rd vL+++++++P v++ + + ++++ F++rf +al++++alfd +e+++pr+s TRIUR3_05951-P1 453 DVQAEDLHIDPDEVLVVSSLYEFRTLMDESLTFDMvsPRDMVLNTIRKMRPSVFISSVVNGPYSAAFFMTRFRHALYHFTALFDVMETTVPRDS 546 *************************98765555***************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++r vEr +l+r++ n++acega+r+er +++++W++r ++aG++++pl+ +++ k +++ + + +++ e++ +l++gWk+r ++ S W TRIUR3_05951-P1 547 DKRLLVERDILARSAINMIACEGADRVERPQNYKEWQARNQRAGLRQLPLDPDIVLMLKDEVKNWHHKHFMISEDHRWLLQGWKGRVQYAHSTW 640 **************************************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.769	242	621	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-94	269	640	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MAATPEELLG LAEPAPLSPS LFLDLPPMTH GDSQNDLALE YISRVLTEED IVDKFFYQYP 60 DHPKLLQAEQ SFAEILANTS PTADQESFAS STSILMPSQG NNTDVMVSGC QVQDPALLNC 120 TGTVEPNSMV FPSESSTNMN MLSSMSMAFF NGMEDANRFL PADDVMMDGR GRKKRSDMDG 180 EMEAGLGRSS KQIVVVLHSA LEEEEEEEEE ATALEMLDRL ILNGYEASPS EMQEVVRVTW 240 EDKEDKAARQ SISRRGRCAA RHTVVTDLET LLTRCAEAVA SSDVCGASKL LERIKCHSSP 300 RGDARQRLAH YFAQGLEARL AGTGSRLYRS LMGKRTSAVE LIRAYYLHTA ASCSIKVGLL 360 FSTNTIYKAV AGRRKLHIVH YGISTGFQWP DLLRLLANRE GGPPEVTITG INTPQPGPCP 420 AALMEQAGDR LSNCASQLGV PFKFRAIASK LEDVQAEDLH IDPDEVLVVS SLYEFRTLMD 480 ESLTFDMVSP RDMVLNTIRK MRPSVFISSV VNGPYSAAFF MTRFRHALYH FTALFDVMET 540 TVPRDSDKRL LVERDILARS AINMIACEGA DRVERPQNYK EWQARNQRAG LRQLPLDPDI 600 VLMLKDEVKN WHHKHFMISE DHRWLLQGWK GRVQYAHSTW AAGD

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MAATPEELLG LAEPAPLSPS LFLDLPPMTH GDSQNDLALE YISRVLTEED IVDKFFYQYP  60
DHPKLLQAEQ SFAEILANTS PTADQESFAS STSILMPSQG NNTDVMVSGC QVQDPALLNC  120
TGTVEPNSMV FPSESSTNMN MLSSMSMAFF NGMEDANRFL PADDVMMDGR GRKKRSDMDG  180
EMEAGLGRSS KQIVVVLHSA LEEEEEEEEE ATALEMLDRL ILNGYEASPS EMQEVVRVTW  240
EDKEDKAARQ SISRRGRCAA RHTVVTDLET LLTRCAEAVA SSDVCGASKL LERIKCHSSP  300
RGDARQRLAH YFAQGLEARL AGTGSRLYRS LMGKRTSAVE LIRAYYLHTA ASCSIKVGLL  360
FSTNTIYKAV AGRRKLHIVH YGISTGFQWP DLLRLLANRE GGPPEVTITG INTPQPGPCP  420
AALMEQAGDR LSNCASQLGV PFKFRAIASK LEDVQAEDLH IDPDEVLVVS SLYEFRTLMD  480
ESLTFDMVSP RDMVLNTIRK MRPSVFISSV VNGPYSAAFF MTRFRHALYH FTALFDVMET  540
TVPRDSDKRL LVERDILARS AINMIACEGA DRVERPQNYK EWQARNQRAG LRQLPLDPDI  600
VLMLKDEVKN WHHKHFMISE DHRWLLQGWK GRVQYAHSTW AAGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-40	274	640	25	378	Protein SCARECROW
5b3h_A	1e-40	274	640	24	377	Protein SCARECROW
5b3h_D	1e-40	274	640	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020162692.1	0.0	scarecrow-like protein 34
TrEMBL	T1LM95	0.0	T1LM95_TRIUA; Uncharacterized protein
STRING	TRIUR3_05951-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-120	GRAS family protein