PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05672-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 863aa    MW: 90961 Da    PI: 4.3181
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05672-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003752777123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C   +C+++F+ + +L +H ++ +
  TRIUR3_05672-P1 752 FECDidYCHMTFKKRAELSVHKKNmC 777
                      89*******************99866 PP
2zf-C2H212.60.00042777799323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+   Cgk+F+++ +L+rH++ H
  TRIUR3_05672-P1 777 CTikSCGKHFRSHKYLRRHQSIH 799
                      77779***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035529752774IPR015880Zinc finger, C2H2-like
SMARTSM003550.46775799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.487775804IPR007087Zinc finger, C2H2
PROSITE patternPS000280777799IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-6780805IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.65E-10791833No hitNo description
SMARTSM003550.0012805829IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.214805834IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-11806829IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280807829IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-8822858No hitNo description
Gene3DG3DSA:3.30.160.608.2E-10830856IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035540835857IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MDFFKVVIYI ENQFNMDKSK LNWGRMSGIY PADQFNMDKS KLNWGLMSGI YPAVAPDGVK  60
HKGHIAGLEP EGELLKGDQD HRARLPQQPP VLEAQECEVG HEHSVIKGSV RPESMEETTL  120
VSEAATEPVV MEGVHVVDEA TAEQEVGVAT PLVNGSVTDP EVIGGASLVS GSITETEVMS  180
GVSLADEAAG ERDVSVGVSL VSGSIAGPEV ISGASLADEA VAETEVSGGL CLVSEAATEA  240
ADVATSSGIT TGAPLDNKGV ADPDTEMGAP TIHKSASEAA TEAADVAIRS EVTTGAPLDN  300
KGDAEQDIKM GASPVDESAS EAATEAADLV TTPGAPLDNQ GVAEPDIKMG ASPVNECAAK  360
TATEAADVVA ALRVTTVASF DNKGVAEPDT KMEASPANES AAEMDFVHSG SLVTEAATHP  420
GLPERVSLAN GAATEREVSE AGSLVSEPAA EAADVVTALE VTTGAPLDNE GTAEPEIKIG  480
PSFANESTAE MDSVLLGSLV TEATTHPGLI GRVSLVTETG VTGGANLDTE VSIEPEDTGR  540
PSLINESTEL EITRGVSIAT DAASEPEVTG QASACSGDSD AALNEPETLD CDLDSANVQI  600
ENAGESVATK VQPSRDDRGD VCSVNAMSTC PVTDKSLAFD EVIPQDDAPS VSCASGVVVR  660
SVGQSGRTDV ICYARRRGKR KLDMEETKTD QLEMGDGDIY GQCEEKATFD ITVPCESTMS  720
NAESADIKLA DIKRGLVDNS ASSKGKKRKG RFECDIDYCH MTFKKRAELS VHKKNMCTIK  780
SCGKHFRSHK YLRRHQSIHN EETPYKCPWE GCSMAFKWTW ALADHFQVHT GEKPYKCRTP  840
GCSKIYKYVS DFTRHRMRCK PQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A9e-4175285823129Lysine-specific demethylase REF6
6a58_A9e-4175285823129Lysine-specific demethylase REF6
6a59_A9e-4175285823129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1674680RRRGKRK
2674681RRRGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197870.10.0uncharacterized protein LOC109783681 isoform X3
TrEMBLM7Z0090.0M7Z009_TRIUA; Metal regulatory transcription factor 1
STRINGTRIUR3_05672-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-39C2H2 family protein