PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05632-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 409aa    MW: 45426.7 Da    PI: 9.0664
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05632-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP52.48.6e-1734871371
          E2F_TDP 13 flkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                     f++l+ +   + + l++++++L    v  +rRRiYDi+NVLe+++++++k+kn+++w+g
  TRIUR3_05632-P1 34 FVALYDRDGVESIGLDDASRRL---GV--ERRRIYDIVNVLESVGILARKAKNRYSWIG 87
                     8999999999************...**..****************************98 PP
2E2F_TDP78.75.2e-25166245171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e  +++l+e+ak L+ e     ++++k+RR+YDi+NVL++l+liek    ++k+++rw g
  TRIUR3_05632-P1 166 RKEKSLGLLTQNFVKLFLTMEVSTISLDEAAKFLLGEgheesNMRTKVRRLYDIANVLSSLKLIEKtqvdTRKPAFRWLG 245
                      79******************************************************************999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013727.4E-153287IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.08E-123386IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-143487IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-183488IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.7E-23163246IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-31166245IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-20167245IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.56E-13168246IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAHVKKKESK PWQSAGGEAV ARLVVRNTIP PRCFVALYDR DGVESIGLDD ASRRLGVERR  60
RIYDIVNVLE SVGILARKAK NRYSWIGFGG VPMALRELKE RALREKSGLA PLPAEELSAA  120
NMSDDEDDDK LGDPEAEREG EKLSQTVDNP SDMPDAPPCR LRSDHRKEKS LGLLTQNFVK  180
LFLTMEVSTI SLDEAAKFLL GEGHEESNMR TKVRRLYDIA NVLSSLKLIE KTQVDTRKPA  240
FRWLGMAGKP KAENGVTIVA SPARKTLSNK RVFGTELTNI GINRSQLEPT TQKKAKLAQG  300
GADILKSYNV AAQKQPGQVN KSGFVYGPFH PSCARKQEPD DCNNVGQRAI AHDWESLADS  360
FRPQYQNPDD EKSITLSLQM LISDRKILVV DCAGNRNYSM TTYLAEVTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-304623932232Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187636.10.0E2F transcription factor-like E2FE isoform X2
TrEMBLM8AAD00.0M8AAD0_TRIUA; E2F transcription factor-like E2FE
STRINGTRIUR3_05632-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.12e-78DP-E2F-like 1