PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_05250-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 326aa MW: 36133.4 Da PI: 4.5506 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 79.3 | 3.6e-25 | 45 | 110 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+ +e+g+++ln++ + L +v ++RRiYDi+NVLe+++liek kn irwkg TRIUR3_05250-P1 45 RYDSSLGLLTKKFINLLKGAEDGTLDLNKAVEIL---EV--QKRRIYDITNVLEGVDLIEKGLKNTIRWKG 110 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.8E-27 | 42 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.0E-31 | 45 | 110 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.07E-15 | 45 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 3.2E-23 | 47 | 110 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.17E-31 | 122 | 234 | No hit | No description |
SuperFamily | SSF144074 | 1.88E-20 | 124 | 233 | No hit | No description |
Pfam | PF16421 | 8.1E-24 | 126 | 231 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MSKENEQKIE IENAQSEVGK GEISQGHHKE STTGPTKGDA ANNCRYDSSL GLLTKKFINL 60 LKGAEDGTLD LNKAVEILEV QKRRIYDITN VLEGVDLIEK GLKNTIRWKG FDMLLPKEVE 120 LQTSALKEEL DSSHDEECRL DEEIREAQEK LLALKLNKDK KKWLYLSKED ICKIPHLQGS 180 TRIAIHAPHG TCVEVPDPNA DMDICKDLES QEKHYQLLLR SSMGPIDCFL ISDHQGVSDP 240 EQVAQDNLDH ASTAGGSDAP RPVDDHPSQA PEKGEGDTVG KHTSEPSSTH ELMSGILKIV 300 LPDTDADADY WLASDVDATM TETWAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 3e-20 | 44 | 110 | 6 | 73 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147413.1 | 0.0 | transcription factor E2FC-like | ||||
TrEMBL | M8AUI5 | 0.0 | M8AUI5_TRIUA; Transcription factor E2FB | ||||
STRING | TRIUR3_05250-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 4e-70 | E2F transcription factor 1 |