PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05136-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 335aa    MW: 37245.9 Da    PI: 7.3285
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05136-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.6e-171561248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+WT+eEd +l+++++q+G g+W++ ++  g+ R++k+c++rw++yl
  TRIUR3_05136-P1 15 GKWTKEEDGILANYIAQHGEGSWRSLPKNAGLLRCGKSCRLRWLNYL 61
                     89*****************************99************97 PP
2Myb_DNA-binding53.26.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++ Ed+l+v++++  G++ W++Ia++++ gRt++++k++w+ +l
  TRIUR3_05136-P1  67 RGNFSKKEDDLIVKLHATNGNR-WSLIASHLP-GRTDNEIKNYWNLHL 112
                      89********************.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.579961IPR017930Myb domain
SuperFamilySSF466898.8E-2811108IPR009057Homeodomain-like
SMARTSM007171.8E-101363IPR001005SANT/Myb domain
PfamPF002494.0E-151561IPR001005SANT/Myb domain
CDDcd001671.20E-91661No hitNo description
PROSITE profilePS5129422.42362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2365115IPR009057Homeodomain-like
SMARTSM007177.2E-1766114IPR001005SANT/Myb domain
PfamPF002492.1E-1567112IPR001005SANT/Myb domain
CDDcd001675.63E-1269112No hitNo description
PfamPF066401.5E-14130335IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRAPCCQKL GLKQGKWTKE EDGILANYIA QHGEGSWRSL PKNAGLLRCG KSCRLRWLNY  60
LRGGLRRGNF SKKEDDLIVK LHATNGNRWS LIASHLPGRT DNEIKNYWNL HLRRQFHSFK  120
KTYTTNNSTT ITIDINMISA TNRKRRGGQA LGQLPRSSTK KKPVPKPAKP QDGCSPIGAT  180
SSASCLPQGN QDQNQPINIT ISHTFGEPCS GNGICHMVRD NIAQNGGVLE TNGAIDWIEL  240
LEPNNSMDHI GLLEDESEME ALLSSIDLTT SGHSVIEHGG QSWLEDLLEM DWEGFVSHLW  300
GQSAQNDLLQ TTMPHAMTGS EVSEFEQFVS WLLSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-211211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157341.10.0myb-related protein P-like
TrEMBLT1LK380.0T1LK38_TRIUA; Uncharacterized protein
STRINGTRIUR3_05136-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.18e-63myb domain protein 12