PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_04855-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 40236.6 Da PI: 5.8469 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.4 | 1.1e-26 | 69 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 lp G++F+Ptd el+ +L+ k+ + + ++ +i+ + +i++++P++Lp v+ + +fF+k ++y g+rk+r+ TRIUR3_04855-P1 69 LPIGVKFDPTDLELL-GHLEGKIGRAMshvlI--DDfipTIEMAeGICYTHPENLP-GVRLDGVASHFFHKICNAYDVGTRKRRKisnsdynvc 158 699************.88****9998855432..232223555557**********.555677899******************7567776665 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +W++tgk++++l+++g +g kk++v+ kg + +ekt+W+mh+y+l TRIUR3_04855-P1 159 DEHLRWHKTGKSRHILDNNGDIKGWKKIMVLRKGGYK-AEKTNWTMHQYHL 208 44778**************************987665.58*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-32 | 54 | 227 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.789 | 69 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-11 | 70 | 208 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MGMLCFKLLF LQKQRIYLTR FYFRPFIVTG KIIATMIRNG ELVPEAGMEC PNCEHRIDNS 60 DVSSQWPGLP IGVKFDPTDL ELLGHLEGKI GRAMSHVLID DFIPTIEMAE GICYTHPENL 120 PGVRLDGVAS HFFHKICNAY DVGTRKRRKI SNSDYNVCDE HLRWHKTGKS RHILDNNGDI 180 KGWKKIMVLR KGGYKAEKTN WTMHQYHLGV DENEKDGELV VCKVFFQLPS EKAGQSVMFA 240 VDEESDSFAV KIDPTTPMTY APQPCRPNGS PSETEQNQEE EEFRQSAVRG AAEWLAGTSS 300 HAVDDVALPA LDEHPSRGGT PDAAYPEKQH LPLVDTDALQ GFPDLGTSPH FSSLALPLE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357763 | 0.0 | AK357763.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1061G08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161769.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Refseq | XP_020187619.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 1e-67 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | M7ZGJ2 | 0.0 | M7ZGJ2_TRIUA; NAC domain-containing protein 8 | ||||
STRING | TRIUR3_04855-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-69 | NAC family protein |