PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_04784-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 338aa MW: 38458.4 Da PI: 7.0753

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_04784-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	6.7e-52	17	143	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk ++++e++wyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ TRIUR3_04784-P1 17 MPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGETDWYFYCPRDRKYRNSARPNRVTAAGFWKATGTDRPIYSS 109 69*************************.89***********88888999*********************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra +g ktdW+mhe+rl TRIUR3_04784-P1 110 eDTRCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 143 66777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-56	15	174	IPR003441	NAC domain
PROSITE profile	PS51005	56.056	16	174	IPR003441	NAC domain
Pfam	PF02365	9.2E-26	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MEGINDVNMD KSEEIIMPGF RFHPTDEELV SFYLKKKIQQ KPISIELIRQ LDIYKFDPWD 60 LPKLASTGET DWYFYCPRDR KYRNSARPNR VTAAGFWKAT GTDRPIYSSE DTRCIGLKKS 120 LVFYRGRAAR GIKTDWMMHE FRLPSLTDPS LPKRPIDKNI PLNDSWTICK IFKKTSSMAQ 180 QMVLSHTWGP PLPGTTEQDL FSAMQPMQAS HFASESSSRS LQVAEAPASQ FNSKHGFQGQ 240 QQLQKPSNTQ DGSSCKVISF NCSPSLELED VNAGMSCRNQ ESSTMKHGNT FSMNNEFEAP 300 GRLNFPFDLG ADSSDDWKCN IPWESFLSPT VPAEMPQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-51	18	177	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-51	18	177	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-51	18	177	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-51	18	177	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	6e-51	18	177	22	171	NAC domain-containing protein 19
3swm_B	6e-51	18	177	22	171	NAC domain-containing protein 19
3swm_C	6e-51	18	177	22	171	NAC domain-containing protein 19
3swm_D	6e-51	18	177	22	171	NAC domain-containing protein 19
3swp_A	6e-51	18	177	22	171	NAC domain-containing protein 19
3swp_B	6e-51	18	177	22	171	NAC domain-containing protein 19
3swp_C	6e-51	18	177	22	171	NAC domain-containing protein 19
3swp_D	6e-51	18	177	22	171	NAC domain-containing protein 19
4dul_A	5e-51	18	177	19	168	NAC domain-containing protein 19
4dul_B	5e-51	18	177	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020199016.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	1e-93	FEZ_ARATH; Protein FEZ
TrEMBL	M7ZQC1	0.0	M7ZQC1_TRIUA; Protein FEZ
STRING	TRIUR3_04784-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	2e-94	NAC domain containing protein 94

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]