PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_04784-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 338aa    MW: 38458.4 Da    PI: 7.0753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_04784-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.96.7e-52171432128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk ++++e++wyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+
  TRIUR3_04784-P1  17 MPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGETDWYFYCPRDRKYRNSARPNRVTAAGFWKATGTDRPIYSS 109
                      69***************************.89***************88888999*************************************98 PP

              NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ +glkk+Lvfy+gra +g ktdW+mhe+rl
  TRIUR3_04784-P1 110 eDTRCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 143
                      66777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-5615174IPR003441NAC domain
PROSITE profilePS5100556.05616174IPR003441NAC domain
PfamPF023659.2E-2618143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEGINDVNMD KSEEIIMPGF RFHPTDEELV SFYLKKKIQQ KPISIELIRQ LDIYKFDPWD  60
LPKLASTGET DWYFYCPRDR KYRNSARPNR VTAAGFWKAT GTDRPIYSSE DTRCIGLKKS  120
LVFYRGRAAR GIKTDWMMHE FRLPSLTDPS LPKRPIDKNI PLNDSWTICK IFKKTSSMAQ  180
QMVLSHTWGP PLPGTTEQDL FSAMQPMQAS HFASESSSRS LQVAEAPASQ FNSKHGFQGQ  240
QQLQKPSNTQ DGSSCKVISF NCSPSLELED VNAGMSCRNQ ESSTMKHGNT FSMNNEFEAP  300
GRLNFPFDLG ADSSDDWKCN IPWESFLSPT VPAEMPQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-511817719168NO APICAL MERISTEM PROTEIN
1ut4_B5e-511817719168NO APICAL MERISTEM PROTEIN
1ut7_A5e-511817719168NO APICAL MERISTEM PROTEIN
1ut7_B5e-511817719168NO APICAL MERISTEM PROTEIN
3swm_A6e-511817722171NAC domain-containing protein 19
3swm_B6e-511817722171NAC domain-containing protein 19
3swm_C6e-511817722171NAC domain-containing protein 19
3swm_D6e-511817722171NAC domain-containing protein 19
3swp_A6e-511817722171NAC domain-containing protein 19
3swp_B6e-511817722171NAC domain-containing protein 19
3swp_C6e-511817722171NAC domain-containing protein 19
3swp_D6e-511817722171NAC domain-containing protein 19
4dul_A5e-511817719168NAC domain-containing protein 19
4dul_B5e-511817719168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199016.10.0protein FEZ-like
SwissprotQ9ZVH01e-93FEZ_ARATH; Protein FEZ
TrEMBLM7ZQC10.0M7ZQC1_TRIUA; Protein FEZ
STRINGTRIUR3_04784-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-94NAC domain containing protein 94
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]