PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_04728-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 21102.2 Da PI: 8.6003 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H TRIUR3_04728-P1 43 FVCKTCDRVFPSFQALGGHRASH 65 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.29E-8 | 41 | 103 | No hit | No description |
Pfam | PF13912 | 9.5E-13 | 42 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-8 | 81 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.1 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MTKRYAFEEK EMARMLLLVS REQAMPMPMP MAVRGDRAPE RVFVCKTCDR VFPSFQALGG 60 HRASHKKPRL DDGGNLKPKL HGCSVCGLEF AIGQALGGHM RRHRAMAVGG GGGVMAITPP 120 TAAIKKHGDS SDDAVVGMKR GLWLDLNHPP CDEYGTSSES DDECGHDAAA GGDTFWRLTR 180 AIYLRFFGYY LSG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367344 | 0.0 | AK367344.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2055H20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201499.1 | 1e-104 | zinc finger protein ZAT12-like | ||||
TrEMBL | M7ZVF0 | 1e-141 | M7ZVF0_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_04728-P1 | 1e-142 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 9e-26 | C2H2 family protein |