PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_04556-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 343aa    MW: 38619.2 Da    PI: 7.0876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_04556-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.2e-51131411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      l+pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk + +++e+e yf+++rd+ky+++ r+nr+t++g+Wkatg+d++++
  TRIUR3_04556-P1  13 LMPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKlASTGSETESYFYCPRDRKYRNSARPNRVTAAGFWKATGTDRPIY 105
                      689***************************.89***************52445577799*********************************** PP

              NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      s+ +++ vglkk+Lvfykgra +g+ktdW+mhe+rl
  TRIUR3_04556-P1 106 SSeDTRCVGLKKSLVFYKGRAARGVKTDWMMHEFRL 141
                      9866777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-5512173IPR003441NAC domain
PROSITE profilePS5100555.40813173IPR003441NAC domain
PfamPF023657.6E-2515141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MESRNDVKAD EILMPGFRFH PTDEELVSFY LKKKIQQKPI SIELIRQLDI YKFDPWDLPK  60
LASTGSETES YFYCPRDRKY RNSARPNRVT AAGFWKATGT DRPIYSSEDT RCVGLKKSLV  120
FYKGRAARGV KTDWMMHEFR LPSLADTSLP KSRPIDKNIP LNDSWTICRI FKKTSSMAAQ  180
RALSHTWGAP LPGATEQDLF SALQPVQALH FASESSSSSL QVAAALPSNQ FNGNYGFQGQ  240
HQQFQKPSNT QEDGSSCRVI SFNSDPSLQV LKDVNADMSC RNQESATTKH GNTFSMNSER  300
EDAGLGRLNF PLDLGADSSD DWECNIPWES FLSPTVPAEI TQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-5011763171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190502.10.0protein FEZ-like
SwissprotQ9ZVH02e-95FEZ_ARATH; Protein FEZ
TrEMBLM7ZK700.0M7ZK70_TRIUA; Protein FEZ
STRINGTRIUR3_04556-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.14e-95NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]