PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_04409-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23720.1 Da PI: 8.9545 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4e-19 | 41 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g TRIUR3_04409-P1 41 LYRGVRQRH-GCKWVAEIRLPRN---RTRLWLGTFDTAEEAAHAYDQAACRLHG 90 59******9.9*********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.72E-27 | 40 | 99 | No hit | No description |
SuperFamily | SSF54171 | 3.73E-21 | 41 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 41 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-33 | 41 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.14 | 41 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-13 | 42 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAPTHTQHVQ ARPRLLRPQA GLAPRAQPMK TAAAAPASVK LYRGVRQRHG CKWVAEIRLP 60 RNRTRLWLGT FDTAEEAAHA YDQAACRLHG DAARLNFPDK AASSRPPLNA AVDAKLQQEE 120 EEVVAEVVEA LRIDRKREKK IKVGGAEDLD MGLEEAGAQT ANSTHLIQVM ESYFEGLFTS 180 EVFDTDQALL QKVQPKICCM LGQKLGLHSH GRAW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-16 | 37 | 104 | 1 | 69 | ATERF1 |
3gcc_A | 6e-16 | 37 | 104 | 1 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068312 | 2e-62 | AK068312.1 Oryza sativa Japonica Group cDNA clone:J013151K12, full insert sequence. | |||
GenBank | AK105725 | 2e-62 | AK105725.1 Oryza sativa Japonica Group cDNA clone:001-201-G08, full insert sequence. | |||
GenBank | AP004658 | 2e-62 | AP004658.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0042B03. | |||
GenBank | AP004691 | 2e-62 | AP004691.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0453D01. | |||
GenBank | AP014964 | 2e-62 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 2e-62 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. | |||
GenBank | CT831646 | 2e-62 | CT831646.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G01, full insert sequence. | |||
GenBank | FJ940221 | 2e-62 | FJ940221.1 Oryza sativa Japonica Group clone KCS046C03 AP domain DRE binding factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179802.1 | 6e-68 | ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | M8B2Q7 | 1e-157 | M8B2Q7_TRIUA; Ethylene-responsive transcription factor RAP2-13 | ||||
STRING | TRIUR3_04409-P1 | 1e-157 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 2e-26 | ERF family protein |