PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_04409-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 214aa    MW: 23720.1 Da    PI: 8.9545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_04409-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44e-194190255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr+++   +WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  TRIUR3_04409-P1 41 LYRGVRQRH-GCKWVAEIRLPRN---RTRLWLGTFDTAEEAAHAYDQAACRLHG 90
                     59******9.9*********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-274099No hitNo description
SuperFamilySSF541713.73E-214199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3041100IPR001471AP2/ERF domain
SMARTSM003802.0E-3341104IPR001471AP2/ERF domain
PROSITE profilePS5103221.144198IPR001471AP2/ERF domain
PfamPF008475.3E-134290IPR001471AP2/ERF domain
PRINTSPR003672.5E-84253IPR001471AP2/ERF domain
PRINTSPR003672.5E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAPTHTQHVQ ARPRLLRPQA GLAPRAQPMK TAAAAPASVK LYRGVRQRHG CKWVAEIRLP  60
RNRTRLWLGT FDTAEEAAHA YDQAACRLHG DAARLNFPDK AASSRPPLNA AVDAKLQQEE  120
EEVVAEVVEA LRIDRKREKK IKVGGAEDLD MGLEEAGAQT ANSTHLIQVM ESYFEGLFTS  180
EVFDTDQALL QKVQPKICCM LGQKLGLHSH GRAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1637104169ATERF1
3gcc_A6e-1637104169ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683122e-62AK068312.1 Oryza sativa Japonica Group cDNA clone:J013151K12, full insert sequence.
GenBankAK1057252e-62AK105725.1 Oryza sativa Japonica Group cDNA clone:001-201-G08, full insert sequence.
GenBankAP0046582e-62AP004658.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0042B03.
GenBankAP0046912e-62AP004691.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0453D01.
GenBankAP0149642e-62AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-62CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8316462e-62CT831646.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G01, full insert sequence.
GenBankFJ9402212e-62FJ940221.1 Oryza sativa Japonica Group clone KCS046C03 AP domain DRE binding factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179802.16e-68ethylene-responsive transcription factor RAP2-13-like
TrEMBLM8B2Q71e-157M8B2Q7_TRIUA; Ethylene-responsive transcription factor RAP2-13
STRINGTRIUR3_04409-P11e-157(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-26ERF family protein