PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_04286-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 551aa MW: 52021.2 Da PI: 5.0085 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103 | 3.9e-32 | 345 | 453 | 22 | 128 |
NAM 22 kvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg 111 k+ gkkl + e+i+ev++yk+ PwdL + ++++++ ew+fF+++dkk+++g+ +nr+t +gyWk++gkd ++ +++ vglkktL+f++g TRIUR3_04286-P1 345 KIMGKKLFV-EAISEVELYKFAPWDLLiNhksCLQSKDLEWFFFCPHDKKNPKGSWTNRTTPNGYWKTSGKDGTIDL-NSRIVGLKKTLIFHEG 436 677777777.78**************6324556777888*************************************9.999************* PP NAM 112 rapkgektdWvmheyrl 128 +apkg++tdWvm ey++ TRIUR3_04286-P1 437 KAPKGNRTDWVMYEYKM 453 ***************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00334 | 2.9E-5 | 223 | 244 | IPR002395 | HMW kininogen |
PRINTS | PR00334 | 2.9E-5 | 248 | 271 | IPR002395 | HMW kininogen |
PRINTS | PR00334 | 2.9E-5 | 286 | 308 | IPR002395 | HMW kininogen |
PROSITE profile | PS51005 | 30.831 | 325 | 476 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.98E-35 | 344 | 471 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-12 | 376 | 452 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 551 aa Download sequence Send to blast |
MTTISVGIVV LAALVLASEG RIARKDLGLD LGGVGFKTGT GVNIGGNIGI GGAIGGAIGG 60 AGSASGSGSA SGSGPGSASG SGSGSGSGSG AASSAGSGAV SGGGSYAGSG AGSGSGGASA 120 SGAGSGSGGA SGSGAGSGAG SGSGAGSGAG SGSGGASGSG AGSGSGGAYG GASGSGAGSG 180 SGGGSGSGAG SGSGYGQGQG KGEGEGQGSG YGQGSGSGHG QGSGSGSGYG EGHGEGYGQG 240 RGAGSGYGEG HGEGYGQGSG AGQGSGYGEG HGEGYGQGSG AGQGSGYGEG HGEGYGQGSG 300 VGQGSGYGEG HGQGSGSGSG YGEGSGSGYG NGAGSGYGEG HGYGKIMGKK LFVEAISEVE 360 LYKFAPWDLL INHKSCLQSK DLEWFFFCPH DKKNPKGSWT NRTTPNGYWK TSGKDGTIDL 420 NSRIVGLKKT LIFHEGKAPK GNRTDWVMYE YKMEDETLVS TGFSKDAYVL SGLGPRIGEQ 480 YRAPFDGNEW ENLDVGTYIL SFAPSSGVED SQVESSAWVT AIVIREPSAP QQSVQFSEHV 540 NICSDEVAGL T |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-25 | 339 | 453 | 30 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB362161 | 1e-145 | AB362161.1 Hordeum vulgare subsp. vulgare mRNA for transcription factor, complete cds. | |||
GenBank | AK355696 | 1e-145 | AK355696.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1024G12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | M7YSE5 | 0.0 | M7YSE5_TRIUA; NAC domain-containing protein 78 | ||||
STRING | TRIUR3_04286-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4731 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64060.1 | 5e-48 | NAC domain containing protein 103 |