PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_04286-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 551aa    MW: 52021.2 Da    PI: 5.0085
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_04286-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1033.9e-3234545322128
              NAM  22 kvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg 111
                      k+ gkkl + e+i+ev++yk+ PwdL  +   ++++++ ew+fF+++dkk+++g+ +nr+t +gyWk++gkd ++   +++ vglkktL+f++g
  TRIUR3_04286-P1 345 KIMGKKLFV-EAISEVELYKFAPWDLLiNhksCLQSKDLEWFFFCPHDKKNPKGSWTNRTTPNGYWKTSGKDGTIDL-NSRIVGLKKTLIFHEG 436
                      677777777.78**************6324556777888*************************************9.999************* PP

              NAM 112 rapkgektdWvmheyrl 128
                      +apkg++tdWvm ey++
  TRIUR3_04286-P1 437 KAPKGNRTDWVMYEYKM 453
                      ***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003342.9E-5223244IPR002395HMW kininogen
PRINTSPR003342.9E-5248271IPR002395HMW kininogen
PRINTSPR003342.9E-5286308IPR002395HMW kininogen
PROSITE profilePS5100530.831325476IPR003441NAC domain
SuperFamilySSF1019417.98E-35344471IPR003441NAC domain
PfamPF023652.1E-12376452IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MTTISVGIVV LAALVLASEG RIARKDLGLD LGGVGFKTGT GVNIGGNIGI GGAIGGAIGG  60
AGSASGSGSA SGSGPGSASG SGSGSGSGSG AASSAGSGAV SGGGSYAGSG AGSGSGGASA  120
SGAGSGSGGA SGSGAGSGAG SGSGAGSGAG SGSGGASGSG AGSGSGGAYG GASGSGAGSG  180
SGGGSGSGAG SGSGYGQGQG KGEGEGQGSG YGQGSGSGHG QGSGSGSGYG EGHGEGYGQG  240
RGAGSGYGEG HGEGYGQGSG AGQGSGYGEG HGEGYGQGSG AGQGSGYGEG HGEGYGQGSG  300
VGQGSGYGEG HGQGSGSGSG YGEGSGSGYG NGAGSGYGEG HGYGKIMGKK LFVEAISEVE  360
LYKFAPWDLL INHKSCLQSK DLEWFFFCPH DKKNPKGSWT NRTTPNGYWK TSGKDGTIDL  420
NSRIVGLKKT LIFHEGKAPK GNRTDWVMYE YKMEDETLVS TGFSKDAYVL SGLGPRIGEQ  480
YRAPFDGNEW ENLDVGTYIL SFAPSSGVED SQVESSAWVT AIVIREPSAP QQSVQFSEHV  540
NICSDEVAGL T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-2533945330140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3621611e-145AB362161.1 Hordeum vulgare subsp. vulgare mRNA for transcription factor, complete cds.
GenBankAK3556961e-145AK355696.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1024G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM7YSE50.0M7YSE5_TRIUA; NAC domain-containing protein 78
STRINGTRIUR3_04286-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.15e-48NAC domain containing protein 103