PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_04273-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 441aa MW: 49072.7 Da PI: 7.4658 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.2 | 9.7e-09 | 319 | 367 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y GV+++ +g WvAeI d + +r ++g+f t e ++++ +++g TRIUR3_04273-P1 319 YIGVWQRT-WGTWVAEITDrE-----ThTRKWVGSFHTTELVVMEYDRWQVRFHG 367 89**9887.**********44.....36**********99999999999888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51735 | 9.51E-60 | 16 | 317 | IPR016040 | NAD(P)-binding domain |
CDD | cd08958 | 3.26E-135 | 17 | 304 | No hit | No description |
Gene3D | G3DSA:3.40.50.720 | 2.1E-56 | 17 | 316 | IPR016040 | NAD(P)-binding domain |
Pfam | PF01370 | 4.1E-26 | 17 | 250 | IPR001509 | NAD-dependent epimerase/dehydratase, N-terminal domain |
SuperFamily | SSF54171 | 1.7E-11 | 318 | 377 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-7 | 318 | 381 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.078 | 318 | 375 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-14 | 318 | 375 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.29E-12 | 319 | 375 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0050662 | Molecular Function | coenzyme binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MQSSSKAGGN GDEEHLVCVT GAGSFIGSWV VKELLLRGYH VRGTARDPAG RKNVHLLALD 60 GAGERLTLCR ADVMHGDSLR AAFRGCRGVF HVASPVSNDP ELVPEAVEGT RNVVNAAADA 120 GVRRLVFTSS YGAVHMDPNR SPDIVVDESC WSDYDYCKQT GNLYCCAKMM AEVVAKEAAT 180 KRGLELAVVV PATTIGPALQ QTLNFSSDHV ARYLTGAKPA YQNVVTAYID VRDVARAHTL 240 VYEHPDARGH RYICVSAVLH RAHFVRLLKD LYPQYPVTAK REDDGKPMAR EYRFSNQKLG 300 DLGLEFTDMR TSLYETRTYI GVWQRTWGTW VAEITDRETH TRKWVGSFHT TELVVMEYDR 360 WQVRFHGFAA RRNFPFETAP VHLVPPARGC DDGELDHVRA MVIVLVHGGG WLLHRIGEIS 420 EGAGREGRSP EFQLPAFSLF M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4r1s_A | 1e-121 | 15 | 316 | 11 | 312 | cinnamoyl CoA reductase |
4r1s_B | 1e-121 | 15 | 316 | 11 | 312 | cinnamoyl CoA reductase |
4r1t_A | 1e-121 | 15 | 316 | 11 | 312 | cinnamoyl CoA reductase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the latter stages of lignin biosynthesis. Catalyzes one of the last steps of monolignol biosynthesis, the conversion of cinnamoyl-CoAs into their corresponding cinnamaldehydes. Probably involved in the formation of lignin in defense responses. {ECO:0000269|PubMed:16380417}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By sphingolipid elicitor (SE). {ECO:0000269|PubMed:16380417}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370917 | 0.0 | AK370917.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2120D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176176.1 | 0.0 | cinnamoyl-CoA reductase 1-like | ||||
Swissprot | Q6K9A2 | 1e-171 | CCR1_ORYSJ; Cinnamoyl-CoA reductase 1 | ||||
TrEMBL | M7Z5K5 | 0.0 | M7Z5K5_TRIUA; Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase | ||||
STRING | TRIUR3_04273-P1 | 0.0 | (Triticum urartu) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 3e-13 | ERF family protein |
Publications ? help Back to Top | |||
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