PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_04273-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 441aa    MW: 49072.7 Da    PI: 7.4658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_04273-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.29.7e-09319367355
              AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y GV+++  +g WvAeI d       + +r ++g+f t e     ++++  +++g
  TRIUR3_04273-P1 319 YIGVWQRT-WGTWVAEITDrE-----ThTRKWVGSFHTTELVVMEYDRWQVRFHG 367
                      89**9887.**********44.....36**********99999999999888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517359.51E-6016317IPR016040NAD(P)-binding domain
CDDcd089583.26E-13517304No hitNo description
Gene3DG3DSA:3.40.50.7202.1E-5617316IPR016040NAD(P)-binding domain
PfamPF013704.1E-2617250IPR001509NAD-dependent epimerase/dehydratase, N-terminal domain
SuperFamilySSF541711.7E-11318377IPR016177DNA-binding domain
SMARTSM003802.2E-7318381IPR001471AP2/ERF domain
PROSITE profilePS5103214.078318375IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-14318375IPR001471AP2/ERF domain
CDDcd000181.29E-12319375No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MQSSSKAGGN GDEEHLVCVT GAGSFIGSWV VKELLLRGYH VRGTARDPAG RKNVHLLALD  60
GAGERLTLCR ADVMHGDSLR AAFRGCRGVF HVASPVSNDP ELVPEAVEGT RNVVNAAADA  120
GVRRLVFTSS YGAVHMDPNR SPDIVVDESC WSDYDYCKQT GNLYCCAKMM AEVVAKEAAT  180
KRGLELAVVV PATTIGPALQ QTLNFSSDHV ARYLTGAKPA YQNVVTAYID VRDVARAHTL  240
VYEHPDARGH RYICVSAVLH RAHFVRLLKD LYPQYPVTAK REDDGKPMAR EYRFSNQKLG  300
DLGLEFTDMR TSLYETRTYI GVWQRTWGTW VAEITDRETH TRKWVGSFHT TELVVMEYDR  360
WQVRFHGFAA RRNFPFETAP VHLVPPARGC DDGELDHVRA MVIVLVHGGG WLLHRIGEIS  420
EGAGREGRSP EFQLPAFSLF M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r1s_A1e-1211531611312cinnamoyl CoA reductase
4r1s_B1e-1211531611312cinnamoyl CoA reductase
4r1t_A1e-1211531611312cinnamoyl CoA reductase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the latter stages of lignin biosynthesis. Catalyzes one of the last steps of monolignol biosynthesis, the conversion of cinnamoyl-CoAs into their corresponding cinnamaldehydes. Probably involved in the formation of lignin in defense responses. {ECO:0000269|PubMed:16380417}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By sphingolipid elicitor (SE). {ECO:0000269|PubMed:16380417}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709170.0AK370917.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2120D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176176.10.0cinnamoyl-CoA reductase 1-like
SwissprotQ6K9A21e-171CCR1_ORYSJ; Cinnamoyl-CoA reductase 1
TrEMBLM7Z5K50.0M7Z5K5_TRIUA; Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
STRINGTRIUR3_04273-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.13e-13ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kawasaki T, et al.
    Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(1): p. 230-5
    [PMID:16380417]