PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_04029-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 322aa MW: 34960.6 Da PI: 7.8698

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_04029-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.3	2.4e-07	131	208	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC..........................TTS-..STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.......................kapskK..lsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + ++++ +K + L +++Y+k+L+ TRIUR3_04029-P1 131 QEHVIAERKRREKLQQQFVSLATIVPGLKkvrdkttwlhlrdhqvpagcslnSGHCHIiqTDKLSLLGSTIDYVKNLE 208 5799***********************777999999999999999999999944444436999999999999999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-10	126	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.941	128	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-12	131	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-5	132	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.49E-5	133	212	No hit	No description
SMART	SM00353	2.7E-6	134	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-10	184	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
PCQEQEELAY MYQQEGGPVP VPSREQQFAE PPLPGHEEQC YTPPMATPAF NPSCSSNFPS 60 FAGSSSLPNL PFGSAMVKNE LGQPSPPPSS NFLSFGAGQA STLNFSGWQR DRVQGTMQQL 120 QAPERRGRAP QEHVIAERKR REKLQQQFVS LATIVPGLKK VRDKTTWLHL RDHQVPAGCS 180 LNSGHCHIIQ TDKLSLLGST IDYVKNLEEK VKALEQGSRR SSESMVFDSK CCISAPNNDA 240 AGPSGSGSGS GYSSPDIEAS IRGNTALLNI CCKKRRGVLV MILSELENQG LSIINTNVIP 300 FTDSCLNITI TAKARPLCPG HI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	ERKRRE
2	137	142	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150236.1	1e-177	transcription factor bHLH66-like
TrEMBL	T1LH74	0.0	T1LH74_TRIUA; Uncharacterized protein
STRING	TRIUR3_04029-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-22	bHLH family protein