PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03895-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 307aa    MW: 33924.6 Da    PI: 8.5541
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03895-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.5e-50111461128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                      lppGfrFhP+d+elv +yL+kk+ g             +     ++ +vd++k+ePwdLp+ +  + kewyf+s rd+kyatg+r+nrat+sgy
  TRIUR3_03895-P1  11 LPPGFRFHPRDDELVLDYLAKKLGGGGggaaaavA---SmygcpTMVDVDLNKIEPWDLPEIACIGGKEWYFYSLRDRKYATGQRTNRATESGY 101
                      79**********************99977665441...15556569**************7666789*************************** PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      Wkatgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r 
  TRIUR3_03895-P1 102 WKATGKDRSISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRK 146
                      **********99.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-583169IPR003441NAC domain
PROSITE profilePS5100554.18311169IPR003441NAC domain
PfamPF023653.8E-2512145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MNSLSMVEAR LPPGFRFHPR DDELVLDYLA KKLGGGGGGA AAAVASMYGC PTMVDVDLNK  60
IEPWDLPEIA CIGGKEWYFY SLRDRKYATG QRTNRATESG YWKATGKDRS ISRKGLLVGM  120
RKTLVFYQGR APKGKKTEWV MHEFRKEGQG DLMKLPLKED WVLCRVFYKT RATVAKPPTG  180
SSYNIESAAA TSLPPLIDNY IAFDHPGMST VQNLEGYEQV PCFSNNPSSH PASSASMNIP  240
VTAMAPMAAD QEQQHMGKAI KDALSQLTRF EQGNVKREAP AQGGVFAQDG FEYLAESGFS  300
QMWNSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-48816912168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3562230.0AK356223.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1031L15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188633.10.0NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-87NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM7YXQ00.0M7YXQ0_TRIUA; NAC domain-containing protein 21/22
STRINGTRIUR3_03895-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.28e-86NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]