PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_03736-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 257aa MW: 28017.6 Da PI: 8.7128 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.3 | 4.2e-11 | 19 | 92 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 l +p a gg+k ++l l d sg+sW++++ +r++ + l++ Wk+ v+++g++++D++vF r +++ +v ++r+ TRIUR3_03736-P1 19 LLFPPLQA---GGDK---QDLLLHDISGNSWNMEHAHRGTMR--SLSRYWKNLVREKGVNVRDIIVFV---RcPDGRILVDLRRA 92 44444444...5553...47***************5555555..59**********************...55899999999986 PP | |||||||
2 | Auxin_resp | 27.6 | 1.2e-10 | 108 | 191 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 ++ a ++s+F+v+Y+P + Fvv+++ v +a ++ + v m +++ +++ + +++G +gv + + v WrsL+ TRIUR3_03736-P1 108 SQLAIQGSAFTVTYYPGRGVESFVVPRAVVDAAAERDWEVDMPVRLLPK-DEVVHVQQQGSASGVIArgtIGAVVPGATTWRSLQ 191 6778899**************************************9765.55555555666655543000334444566777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.432 | 1 | 93 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.17E-8 | 8 | 77 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.4E-11 | 8 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.92E-11 | 9 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.3E-8 | 27 | 92 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.6E-14 | 107 | 191 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MPQADWARSY LHVPKECELL FPPLQAGGDK QDLLLHDISG NSWNMEHAHR GTMRSLSRYW 60 KNLVREKGVN VRDIIVFVRC PDGRILVDLR RATPVNRDWG GQEVAQASQL AIQGSAFTVT 120 YYPGRGVESF VVPRAVVDAA AERDWEVDMP VRLLPKDEVV HVQQQGSASG VIARGTIGAV 180 VPGATTWRSL QVDWDGSTSS APAATAVNKW QVEPEGSRDA KRRRLSDTVP PVASTAQGGI 240 KLFGRTLVPE GGSGSTS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 220 | 224 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191290.1 | 1e-156 | auxin response factor 13-like | ||||
TrEMBL | M7YTR3 | 0.0 | M7YTR3_TRIUA; Auxin response factor | ||||
STRING | TRIUR3_03736-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP49622 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 6e-14 | auxin response factor 16 |