PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03734-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 257aa    MW: 28742.6 Da    PI: 6.5104
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03734-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC138.41.9e-43801822101
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      l++fw++q   ie+at +k+h + l ri+ki+kade v+misaeaPv++skace++ le+t+rsw+ +eenkr+ lkksd+aaav+rtd++dfl
  TRIUR3_03734-P1  80 LQQFWAQQrseIEQATGIKKHPVQLKRIRKIMKADEGVHMISAEAPVVFSKACEMLTLEMTMRSWMVTEENKRQILKKSDVAAAVARTDVYDFL 173
                      89*****99999********************************************************************************** PP

            NF-YC  93 vdivprdel 101
                       di+  de+
  TRIUR3_03734-P1 174 ADIIQMDEM 182
                      ****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.75E-2249173IPR009072Histone-fold
Gene3DG3DSA:1.10.150.600.00163113IPR001606ARID DNA-binding domain
PfamPF008082.0E-13103164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-26114177IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
QRQLAMGDVA AGSHVYPASA YPPGATVAAP PGITPVLPVH SQRHHIFPAN PAQLSAQNQL  60
MYEQSQQYQQ QLQQLHQRRL QQFWAQQRSE IEQATGIKKH PVQLKRIRKI MKADEGVHMI  120
SAEAPVVFSK ACEMLTLEMT MRSWMVTEEN KRQILKKSDV AAAVARTDVY DFLADIIQMD  180
EMEEEGVGLQ RAGPPPPLGA PAGAYPYYYP PQLQVPGAAM VHGGQQVPQV HLPHVWIDLQ  240
EQQEKEHHAE DQQSESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-3887177393NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190887.11e-122nuclear transcription factor Y subunit C-4-like
SwissprotQ655V53e-81NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLT1LGE50.0T1LGE5_TRIUA; Uncharacterized protein
STRINGTRIUR3_03734-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-47nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]