PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03342-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 193aa    MW: 21124.7 Da    PI: 8.3637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03342-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-183989155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     + ++GVr++  +grWv+eIr+p   + r +r +lg+f ta +Aa+a++aa+++l+g
  TRIUR3_03342-P1 39 CPFRGVRQRT-WGRWVSEIREP---N-RgARLWLGTFATALDAARAYDAAARALYG 89
                     679****999.**********8...3.35***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.3634097IPR001471AP2/ERF domain
SMARTSM003802.0E-3040103IPR001471AP2/ERF domain
CDDcd000181.73E-144172No hitNo description
Gene3DG3DSA:3.30.730.101.2E-284197IPR001471AP2/ERF domain
PRINTSPR003673.4E-94152IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-194197IPR016177DNA-binding domain
PfamPF008471.1E-114189IPR001471AP2/ERF domain
PRINTSPR003673.4E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKQTPAPADQ QQNRRRCCPL RRSRKGCMKG KGGPENQRCP FRGVRQRTWG RWVSEIREPN  60
RGARLWLGTF ATALDAARAY DAAARALYGD CARLNLAAPP LPPMTATVPL PHAQEQQPPA  120
HSTDTNNTTA LCYSSSTSTV STTTPTNLGT FDIEWSYYNA AGALELGDFE AYVAGLPKAE  180
DFGLEGFQEV MGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-134196662ATERF1
3gcc_A3e-134196662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184362.11e-109LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA19e-65DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLM7ZQJ51e-141M7ZQJ5_TRIUA; Dehydration-responsive element-binding protein 2C
STRINGTRIUR3_03342-P11e-142(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.18e-25ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]