PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03165-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 392aa    MW: 43271.9 Da    PI: 10.1665
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03165-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.51e-19257291135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C  C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  TRIUR3_03165-P1 257 CDDCNTTKTPLWRGGPNGPKSLCNACGIRYRKRRR 291
                      99******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.2E-17251303IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.624251287IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-13251291No hitNo description
Gene3DG3DSA:3.30.50.103.1E-15255291IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.46E-16256306No hitNo description
PfamPF003201.8E-17257291IPR000679Zinc finger, GATA-type
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAGTSHKSKQ DGPARSSHDD LASHGNEEHQ AQPRSSAPIT GHKRMRTKAV VHLGKRPDDI  60
ISTENSNESQ AADVGNKNVE GADVEQPPKA KRQKTGGTED EILIILQLYT GNFSNFFWIM  120
VKDMIQQRAI RNQAPREETS MKPPLVGCEA KLNPHPQPQQ SRGINPNPSL HSNPTQPRAA  180
ARGIESSPPP AFLLPFPSLP FPARSIKRAI GEQRRSGIDP SSSYKMSPAE MESHKMVEVE  240
AAADPEERTA SGDPKACDDC NTTKTPLWRG GPNGPKSLCN ACGIRYRKRR RVAMGLDPEA  300
KRKPKRDDAI LSKAEASSTK EEEEEDNKAS TNKIKTKTTT HTVELHMVGF AKDAVLKQRR  360
RMRMRRRKPS CLGEEERAAI LLMSLSSGVI YA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286290RKRRR
2287291KRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641264e-80AK364126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021P18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM7YM450.0M7YM45_TRIUA; GATA transcription factor 17
STRINGTRIUR3_03165-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-19GATA transcription factor 15