PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03114-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 365aa    MW: 41119.5 Da    PI: 5.3682
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03114-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.3e-141259249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rien+ +r+ tf+kR + ++K A+ LS+L++++vavi+  ++gk++ +
  TRIUR3_03114-P1 12 RIENDKKRNDTFTKRHANLFKSASNLSTLTGVRVAVILEKESGKMHGF 59
                     8********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-7162IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-6525IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-131173IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.3811263IPR002100Transcription factor, MADS-box
PfamPF003198.5E-171259IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-62540IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-64061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MLRQEVLLGV CRIENDKKRN DTFTKRHANL FKSASNLSTL TGVRVAVILE KESGKMHGFG  60
MPLVEPIVDS FMSGDPLIEP LVDEQAKDRI VLLQREVTRL DMENAKLDTR ANLSLQHIKK  120
IQAQNPGLPA NNIFSKGEDL SLEDLTNLFN ALLRVKEEIR RRLPPLQHGH EPTTGGPNVR  180
QNWLLPSGPS QDHPPIHQTS QKPSSSHNLP PQVMPPILVP LTPQRTMEPH FPMHLPHMFY  240
SPVYLRPTSV VDHAKDLPPP LQPQLQDYAS PTRPLQNNMS PNSIVENTMD KSPQLFYSGG  300
NDTFIHESFG YDNLANAPLD QAHEVLGMDS YLDYNISDLE QYNMECDEWV NNAPPEFSGG  360
NDDDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLT1LES00.0T1LES0_TRIUA; Uncharacterized protein
STRINGTRIUR3_03114-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-10AGAMOUS-like 62