PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03045-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CO-like
Protein Properties Length: 396aa    MW: 43651.4 Da    PI: 4.7427
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03045-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.1e-06445540
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++e++   +C+++   lC +C  + H+       Ht++
  TRIUR3_03045-P1  4 LCDYCGEHRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                     6******99*********************657888889876 PP
2zf-B_box25.92.1e-084789541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+++ ++++   C + ++ lC++C  ++H+       H++++
  TRIUR3_03045-P1 47 LCDRCASQPAMVRCLEENTSLCQNCDWNGHSAgssaagHKRQN 89
                     7*****************************6688899998876 PP
3CCT62.61.2e-21340383144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R+ a++RYkeK+k+RkF+ kirYesRKa+A+ R+RvKGrFvk+ 
  TRIUR3_03045-P1 340 RDSAITRYKEKKKRRKFDHKIRYESRKARADVRKRVKGRFVKAG 383
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.8E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.869147IPR000315B-box-type zinc finger
CDDcd000215.36E-8447No hitNo description
PROSITE profilePS501199.2864390IPR000315B-box-type zinc finger
PfamPF006431.0E-54790IPR000315B-box-type zinc finger
CDDcd000213.52E-54788No hitNo description
SMARTSM003360.0914890IPR000315B-box-type zinc finger
PROSITE profilePS5101714.971340382IPR010402CCT domain
PfamPF062039.0E-17340382IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGALCDYCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LEENTSLCQN CDWNGHSAGS SAAGHKRQNI NCYSGCPSSA ELSRMWSFIL DIPNVAHELN  120
CEQVISMMSI SDSAVSNGDN AQGDNSLLDM ACATLDEEDK QKSVIGSSSE AGLNLLPPAN  180
NQTAVSVDST TAKYTPDKHM FSKDSIYEDF SMDDIDLSYE NYEELFGNSH IQTEELFDDA  240
GIDSYFEVKE ATAVNSDEQP KPKQPAASNA LSADSGMSNP AVKEDDSSLC IPVRQAISYS  300
GFTGESIPEE YQDCGVSPML LMGEPPWLPP GPDGSFAGIR DSAITRYKEK KKRRKFDHKI  360
RYESRKARAD VRKRVKGRFV KAGEAYDYDP LDTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349353KKKRR
2349354KKKRRK
3350354KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2531300.0AK253130.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf114k16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150634.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
SwissprotQ9SSE51e-119COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLM7ZT950.0M7ZT95_TRIUA; Zinc finger protein CONSTANS-LIKE 9
STRINGTRIUR3_03045-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-96CONSTANS-like 9