PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_02890-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 766aa    MW: 85790.8 Da    PI: 6.6639
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_02890-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-2373174199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + 
  TRIUR3_02890-P1  73 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RG 162
                      99*****************************7555544..58************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+v+r+
  TRIUR3_02890-P1 163 ESGELRVGVRRA 174
                      9999*****996 PP
2Auxin_resp1072.1e-35199280183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++tk++F+v+Y+Pr+s+seF+++++k+++++k+ +s+G+Rfkm+fe+e+++e+r++Gt+vg  +ld+  Wp+S WrsLk
  TRIUR3_02890-P1 199 AWHAINTKTMFTVYYKPRTSRSEFIIPYDKYMESVKNIYSIGTRFKMRFEGEEAPEQRFTGTIVGSDNLDQ-LWPESSWRSLK 280
                      89******************************************************************999.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.23E-3867202IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-4067188IPR015300DNA-binding pseudobarrel domain
CDDcd100179.72E-2171173No hitNo description
SMARTSM010194.2E-2373175IPR003340B3 DNA binding domain
PROSITE profilePS5086311.84373175IPR003340B3 DNA binding domain
PfamPF023623.1E-2173174IPR003340B3 DNA binding domain
PfamPF065074.8E-32199280IPR010525Auxin response factor
PfamPF023091.0E-13616721IPR033389AUX/IAA domain
SuperFamilySSF542773.09E-13630713No hitNo description
PROSITE profilePS5174525.583636729IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2400.001654708No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MNQVAANQMR LYDLPSKLLC RVLNVELKAE ADTDEVYAQV MLMPEPEQSE ATTDKSSPAT  60
GGATPARPAV RSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMTQSPPT QELVAKDLHG  120
MEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGESGELRVG VRRAMRQLSN  180
IASSVISSHS MHLGVLATAW HAINTKTMFT VYYKPRTSRS EFIIPYDKYM ESVKNIYSIG  240
TRFKMRFEGE EAPEQRFTGT IVGSDNLDQL WPESSWRSLK VRWDESSTIP RPDRVSPWEI  300
EPASSPPVNP LPLSRPKRSR PNVPPASPES SVRTKEGATR ADMDCAQAQR NQNNTALPGQ  360
EQRSNKLTDI NDFDATVQKP MMWSPPPPPN IGKNNSLTFQ QRPSVHNSIQ LGRRETDFKD  420
ASSGAQPFGD SLGFFMQTTF DEAPNRLSSF KNQFQDHSYA RQYADPYLFM HQQPSLTVES  480
SRKMHTENNE LHFWNGPSTA HGNSRDQAQD FRFTEHQSNW LSPQFSRAEQ PRVIRPHASI  540
APIELEKTTE GSDFKIFGFK VDTASAGFNH LNSPMAGTHE PVLQTQPSVS LDHLQTDCSP  600
EVSLSIAGTT ENEKNTQQCP QSSKDVQSKS HGASTRSCTK VHKQGVALGR SVDLSKFVDY  660
DELTAELDKM FEFDGELMSS NKNWQIVYTD NEGDMMLVGD DPWEEFCSIV RKICIYTKEE  720
VQKMNSKPSG PRKEEGSLDG DGASEKAHLP ASSDLNSSQL GCVKAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-145130556357Auxin response factor 1
4ldw_A1e-145130556357Auxin response factor 1
4ldw_B1e-145130556357Auxin response factor 1
4ldx_A1e-145130556357Auxin response factor 1
4ldx_B1e-145130556357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727980.0AK372798.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3013C04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197968.10.0auxin response factor 4-like
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLM8AD150.0M8AD15_TRIUA; Auxin response factor
STRINGTRIUR3_02890-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]