PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_01901-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 394aa MW: 44453.9 Da PI: 6.5829

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_01901-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.9	1.7e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s TRIUR3_01901-P1 14 LLPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPKLASSGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYS 106 579*************************.89***********8888999*********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +glkk+Lvfykgra kg ktdW+mhe+rl TRIUR3_01901-P1 107 SeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-58	9	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.046	14	172	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MDERSDMDKS EEVLLPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP 60 KLASSGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLTDPSLP KVPIDKNIPA NDAWAICRIF KKPSSMAQRA 180 LSHSWGPQST ATIEPDLLSA LQSIQASHFA FESSPCSAEV AIPVSRLNSQ HYFHEQQQQK 240 PNSSQNGSSC KVINFSRGPS LTHISDKDIH SGPIIFPFET QTLQRSSDAV LFSIAPGIIN 300 SMNEASPEIE FEHPEQCNGY AVDWVIDTNE GIGNRDEDPY TRKPDNGHNT GNEYGVPPKI 360 KFPFDLGLHS SDDWISNVPC ESLNCPPASP RDVQ

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MDERSDMDKS EEVLLPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP  60
KLASSGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSLTDPSLP KVPIDKNIPA NDAWAICRIF KKPSSMAQRA  180
LSHSWGPQST ATIEPDLLSA LQSIQASHFA FESSPCSAEV AIPVSRLNSQ HYFHEQQQQK  240
PNSSQNGSSC KVINFSRGPS LTHISDKDIH SGPIIFPFET QTLQRSSDAV LFSIAPGIIN  300
SMNEASPEIE FEHPEQCNGY AVDWVIDTNE GIGNRDEDPY TRKPDNGHNT GNEYGVPPKI  360
KFPFDLGLHS SDDWISNVPC ESLNCPPASP RDVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-53	14	175	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-53	14	175	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-53	14	175	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-53	14	175	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	14	175	20	171	NAC domain-containing protein 19
3swm_B	1e-52	14	175	20	171	NAC domain-containing protein 19
3swm_C	1e-52	14	175	20	171	NAC domain-containing protein 19
3swm_D	1e-52	14	175	20	171	NAC domain-containing protein 19
3swp_A	1e-52	14	175	20	171	NAC domain-containing protein 19
3swp_B	1e-52	14	175	20	171	NAC domain-containing protein 19
3swp_C	1e-52	14	175	20	171	NAC domain-containing protein 19
3swp_D	1e-52	14	175	20	171	NAC domain-containing protein 19
4dul_A	8e-53	14	175	17	168	NAC domain-containing protein 19
4dul_B	8e-53	14	175	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184786.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	4e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A446T466	0.0	A0A446T466_TRITD; Uncharacterized protein
TrEMBL	M7ZUW6	0.0	M7ZUW6_TRIUA; Protein FEZ
STRING	TRIUR3_01901-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-101	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]