PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_01515-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 214aa MW: 23173.9 Da PI: 7.6413 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 90 | 1.8e-28 | 41 | 128 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kv tpsdv+k++rlv+pk++ae++ +++ ++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+ ++ TRIUR3_01515-P1 41 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldASSTDKGLLLSFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTQHYHH 128 89***************************966777899********************************************966664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-38 | 29 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-27 | 38 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.16E-25 | 39 | 123 | No hit | No description |
Pfam | PF02362 | 1.6E-25 | 41 | 127 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.59 | 41 | 143 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-17 | 41 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MEFTAIRASA AAAGGCSSPP PAADHKAEEE AAGPVEKEHM FDKVVTPSDV GKLNRLVIPK 60 QHAEKYFPLD ASSTDKGLLL SFEDRAGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA 120 GDTQHYHHQH QSLVLESVPV RMAAAPGHPE PSAVATSGSK RVRLFGVNLE CAADAEEDFS 180 GHGRTATTAL QLLSPASSSS SSCGKARCSL NLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-52 | 36 | 128 | 3 | 95 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-52 | 36 | 128 | 3 | 95 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366601 | 1e-171 | AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197119.1 | 4e-70 | B3 domain-containing protein Os03g0120900-like | ||||
Swissprot | Q8LMR9 | 1e-58 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | T1LAJ2 | 1e-157 | T1LAJ2_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_01515-P1 | 1e-158 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 2e-54 | B3 family protein |
Publications ? help Back to Top | |||
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