PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01060-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 135aa    MW: 14661.8 Da    PI: 9.9284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01060-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144163123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cg+sF++   L  H  +H
  TRIUR3_01060-P1 41 FVCKTCGRSFPSFQALGGHRTSH 63
                     89**********99998888777 PP
2zf-C2H214.97.6e-0597119123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F +   L  H+r+H
  TRIUR3_01060-P1  97 HRCHICGHGFETGQALGGHMRRH 119
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.79E-74163No hitNo description
SMARTSM003550.0864163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4084168IPR007087Zinc finger, C2H2
PfamPF139121.3E-114165IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SuperFamilySSF576679.79E-792119No hitNo description
PfamPF139122.5E-1096122IPR007087Zinc finger, C2H2
SMARTSM003550.05197119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01497124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MTKQQRAEAA DQHAVTLALS LCLGAVADRS KKMRRAGGDE FVCKTCGRSF PSFQALGGHR  60
TSHLRGRHGL ALALTTGDQY CSVKPKSATA TDQKQAHRCH ICGHGFETGQ ALGGHMRRHR  120
EEVAQALPVL LELFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654822e-97AK365482.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198427.17e-83zinc finger protein ZAT8-like
TrEMBLM8A3P34e-93M8A3P3_TRIUA; Zinc finger protein 1
STRINGTRIUR3_01060-P17e-94(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-18C2H2 family protein