PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_00729-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 740aa MW: 84120.6 Da PI: 7.8707

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_00729-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	345.9	6.4e-106	360	732	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+ lL++cA+a++ +++ la+++L+++++++s dgd +qRla+y++ +L+arla+ +s++y+ l ++ts ++e l a+++f +P++k s TRIUR3_00729-P1 360 LRALLVHCAQAIALENHLLASEVLQKIRQHSSADGDCTQRLAFYLADGLEARLAGIGSQVYRNLMERRTS---TTEWLEAYSVFIASCPFVKTS 450 5789*********************************************************9999998...8999************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + a qaIl+ +g+ rvHi+Df+i G+QWp ++q +a+++eg+p+lRiTg++ ++g e++eetg+rLa++A+ ++vpf+++ ++a+r+ TRIUR3_00729-P1 451 YYFASQAILDVSKGQPRVHIVDFGIDFGFQWPLMIQRFAQQEEGAPKLRITGIDVCQPGfrPCEMIEETGKRLADYANMFKVPFQYQGIAASRW 544 ***************************************************99999999*************************** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +++++e+L+++++E+l++n+++++++l e+ + s+rdevLk++++++Pkv++ + +s+ F +rf e + +ys+lfd+l+a++p ++e TRIUR3_00729-P1 545 DNIKIEDLNIDEDEVLIINCIFRMKNLGLETDGIYSARDEVLKTMRRMNPKVFISGTVNGLNSSPFFIQRFKEVMLHYSSLFDMLDANVPLDNE 638 ********************************************************99**************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+++Er +gr++ n++ace aer++r +++++W++r +aGF+++p+++ + k++ ++ + ++ d++ e+ g+l++gWk+r ++++S W+ TRIUR3_00729-P1 639 ARKMIERTPFGRDALNIIACEDAERTQRPQSYRQWQARCLKAGFQQLPVDQAILKNIVHMKNLHYHDEFFAIEDCGWLLQGWKGRVIYAISKWK 732 *************************************************************9999999*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.629	334	712	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-103	360	732	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
FICCGTKKIH LSRIEVEKRL STMAIESLRD NLGTVEATDK PYDGDSSFQK QRTMYNYKQR 60 GPHFFPQPTT GARTYLHRTD TGPGLCNVNS SHGQNQIQIA AEHHRMRSND ALHYISQMLM 120 EDVDERVDIC QGEAALQAAE KPFRDILGQG YTPATYWPPL HGNNETGISD KSGSSCHKRL 180 WSNSFSNYCS GYSVLRPLTT PLSPYICNTS LSLPNHLLTS VGQASGSGFP TLDCQRRGIE 240 EATMFAPSIH KLVIYLENGI LSISQLTTKA KTGERSENAI FALADQREWD ILQGRGHKHH 300 AITTCAIIRN ENFECLSDFQ TTRLRETTAE KGNNNSLKGR SKGRQKLWQR KQPKKELVDL 360 RALLVHCAQA IALENHLLAS EVLQKIRQHS SADGDCTQRL AFYLADGLEA RLAGIGSQVY 420 RNLMERRTST TEWLEAYSVF IASCPFVKTS YYFASQAILD VSKGQPRVHI VDFGIDFGFQ 480 WPLMIQRFAQ QEEGAPKLRI TGIDVCQPGF RPCEMIEETG KRLADYANMF KVPFQYQGIA 540 ASRWDNIKIE DLNIDEDEVL IINCIFRMKN LGLETDGIYS ARDEVLKTMR RMNPKVFISG 600 TVNGLNSSPF FIQRFKEVML HYSSLFDMLD ANVPLDNEAR KMIERTPFGR DALNIIACED 660 AERTQRPQSY RQWQARCLKA GFQQLPVDQA ILKNIVHMKN LHYHDEFFAI EDCGWLLQGW 720 KGRVIYAISK WKPDETHGDQ

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

FICCGTKKIH LSRIEVEKRL STMAIESLRD NLGTVEATDK PYDGDSSFQK QRTMYNYKQR  60
GPHFFPQPTT GARTYLHRTD TGPGLCNVNS SHGQNQIQIA AEHHRMRSND ALHYISQMLM  120
EDVDERVDIC QGEAALQAAE KPFRDILGQG YTPATYWPPL HGNNETGISD KSGSSCHKRL  180
WSNSFSNYCS GYSVLRPLTT PLSPYICNTS LSLPNHLLTS VGQASGSGFP TLDCQRRGIE  240
EATMFAPSIH KLVIYLENGI LSISQLTTKA KTGERSENAI FALADQREWD ILQGRGHKHH  300
AITTCAIIRN ENFECLSDFQ TTRLRETTAE KGNNNSLKGR SKGRQKLWQR KQPKKELVDL  360
RALLVHCAQA IALENHLLAS EVLQKIRQHS SADGDCTQRL AFYLADGLEA RLAGIGSQVY  420
RNLMERRTST TEWLEAYSVF IASCPFVKTS YYFASQAILD VSKGQPRVHI VDFGIDFGFQ  480
WPLMIQRFAQ QEEGAPKLRI TGIDVCQPGF RPCEMIEETG KRLADYANMF KVPFQYQGIA  540
ASRWDNIKIE DLNIDEDEVL IINCIFRMKN LGLETDGIYS ARDEVLKTMR RMNPKVFISG  600
TVNGLNSSPF FIQRFKEVML HYSSLFDMLD ANVPLDNEAR KMIERTPFGR DALNIIACED  660
AERTQRPQSY RQWQARCLKA GFQQLPVDQA ILKNIVHMKN LHYHDEFFAI EDCGWLLQGW  720
KGRVIYAISK WKPDETHGDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-40	364	732	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198291.1	0.0	scarecrow-like protein 9
TrEMBL	T1L8G0	0.0	T1L8G0_TRIUA; Uncharacterized protein
STRING	TRIUR3_00729-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-147	GRAS family protein