PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_00728-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 736aa MW: 83673.3 Da PI: 8.1989

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_00728-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	356	5.5e-109	356	728	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av++++ la++lL ++++++s dgd +qRla+y++ +L+arla+ +s++y+ l ++ts +++ l a++lf ++P+ + TRIUR3_00728-P1 356 LRTLLIHCAQAVAEDSYLLASELLLKIRQHSSADGDCTQRLAFYLADGLKARLAGIGSQVYRNLVERRTS---TADWLEAYSLFLAAFPFGRAL 446 6789**********************************************************999999...899************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + a qaIl+ +g+ rvHi+Df+i+ G+QWp ++q La+++eg+p+lRiTg++ p++g e++eetg+rLa++A++++vpf+++ ++a+r+ TRIUR3_00728-P1 447 YYFATQAILDVSQGKPRVHIVDFGIGFGFQWPLMIQRLAQQEEGAPKLRITGIDVPQPGfyPCEMIEETGKRLADYANRFKVPFQYQGIAASRW 540 ****************************************************************************************** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++e+L+++++E+l+Vn+++++++l +e+ +++ +rd+vLk++++++Pk+++ + ++s+ F +rf e + +ys+lfd+l+a++pr++e TRIUR3_00728-P1 541 ETIKIEDLNIDEDEVLIVNCMFRMKNLGHETDAVNGARDKVLKTMRRMNPKIFISGTVNGLLSSPFFIQRFKEVMLHYSSLFDMLDANVPRDNE 634 ****************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r++vEr l+g+++ n++acegaer++r e +++W++r +aGF+++p+++ + k++ + + ++ +++ e+ g+l++gWk+r L+++S W+ TRIUR3_00728-P1 635 ARKMVERILFGQDALNIIACEGAERTQRPEIYRQWQARCLKAGFQQLPVDQAILKNIVHRKNLHYHEEFFAVEDCGWLLQGWKGRVLYAISKWK 728 *************************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.53	330	708	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-106	356	728	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
FFFFQETSRF ICCWTTITIY LILRWKRLSR MAIEPLRDNL DGIAVTDQPY DGDSSSQQQL 60 TVHSYDLSGP HSTVLSPANQ VSVNSSHGQN KFQIAAGGSP ERHRIRSNDA LHYISQMLME 120 DVDEGVGICQ GAALQAAEKP FRDILGEGYA PPTNWPPLHS KNIPDNPDKS GTNCYKRLWN 180 TSFSNDYSSY NVLQPLATPL SPYICNRSPF IPNQSSISVG LTSGSGLPAL HGQRGVREER 240 MFAPSIDKLV IYSKNNILYI SQLTTKEKVR ERTENTIFEV ADPRGWAIFQ GRNNEHHAIT 300 TCAIIRNESF DQVVLCYGHS DRITRLQERM AGEGNKISLK GQSRSRKQPR KELVDLRTLL 360 IHCAQAVAED SYLLASELLL KIRQHSSADG DCTQRLAFYL ADGLKARLAG IGSQVYRNLV 420 ERRTSTADWL EAYSLFLAAF PFGRALYYFA TQAILDVSQG KPRVHIVDFG IGFGFQWPLM 480 IQRLAQQEEG APKLRITGID VPQPGFYPCE MIEETGKRLA DYANRFKVPF QYQGIAASRW 540 ETIKIEDLNI DEDEVLIVNC MFRMKNLGHE TDAVNGARDK VLKTMRRMNP KIFISGTVNG 600 LLSSPFFIQR FKEVMLHYSS LFDMLDANVP RDNEARKMVE RILFGQDALN IIACEGAERT 660 QRPEIYRQWQ ARCLKAGFQQ LPVDQAILKN IVHRKNLHYH EEFFAVEDCG WLLQGWKGRV 720 LYAISKWKPN ETYGDQ

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

FFFFQETSRF ICCWTTITIY LILRWKRLSR MAIEPLRDNL DGIAVTDQPY DGDSSSQQQL  60
TVHSYDLSGP HSTVLSPANQ VSVNSSHGQN KFQIAAGGSP ERHRIRSNDA LHYISQMLME  120
DVDEGVGICQ GAALQAAEKP FRDILGEGYA PPTNWPPLHS KNIPDNPDKS GTNCYKRLWN  180
TSFSNDYSSY NVLQPLATPL SPYICNRSPF IPNQSSISVG LTSGSGLPAL HGQRGVREER  240
MFAPSIDKLV IYSKNNILYI SQLTTKEKVR ERTENTIFEV ADPRGWAIFQ GRNNEHHAIT  300
TCAIIRNESF DQVVLCYGHS DRITRLQERM AGEGNKISLK GQSRSRKQPR KELVDLRTLL  360
IHCAQAVAED SYLLASELLL KIRQHSSADG DCTQRLAFYL ADGLKARLAG IGSQVYRNLV  420
ERRTSTADWL EAYSLFLAAF PFGRALYYFA TQAILDVSQG KPRVHIVDFG IGFGFQWPLM  480
IQRLAQQEEG APKLRITGID VPQPGFYPCE MIEETGKRLA DYANRFKVPF QYQGIAASRW  540
ETIKIEDLNI DEDEVLIVNC MFRMKNLGHE TDAVNGARDK VLKTMRRMNP KIFISGTVNG  600
LLSSPFFIQR FKEVMLHYSS LFDMLDANVP RDNEARKMVE RILFGQDALN IIACEGAERT  660
QRPEIYRQWQ ARCLKAGFQQ LPVDQAILKN IVHRKNLHYH EEFFAVEDCG WLLQGWKGRV  720
LYAISKWKPN ETYGDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-44	360	728	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198289.1	0.0	scarecrow-like protein 34
TrEMBL	T1L8F9	0.0	T1L8F9_TRIUA; Uncharacterized protein
STRING	TRIUR3_00728-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-140	GRAS family protein