PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_00725-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 739aa MW: 83673 Da PI: 7.93

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_00725-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	331.7	1.4e-101	363	734	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d+ a++lL+++++++s dg +qRla+y++ +L+arla+ +s++y+ l ++ts +++ l a + f+ +P+ + s TRIUR3_00725-P1 363 LRTLLVNCAQAVAEHDHLVASELLKKIRQHSSADGGCTQRLAFYLADGLEARLAGIGSQVYRNLMERRTS---TTDWLDACSHFHASCPFDRAS 453 6789**********************************************************999998...7889999999******* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + a qaIl +g+ rvHi+Df+i+ GlQWp ++q +++++eg+p+lRiTg++ p++g e++eetg+rLa++A+ ++vpf+++ ++a+r+ TRIUR3_00725-P1 454 YHFASQAILGVSQGQPRVHIVDFGIGFGLQWPLMIQRFSQQEEGAPKLRITGIDIPQPGlhPCEMIEETGKRLADYANMFKVPFQYQGIAASRW 547 ******************************************************99999*************************** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++e+L++++gE+l++n+++++++l +e+ +++s+rdev+k+++ ++Pk+++ + ++s+ F +rf e + +ys++fd+l+a++pr++e TRIUR3_00725-P1 548 ETIKIEDLNIEEGEVLIINCMFRMKNLGHETIAINSTRDEVIKTMR-MNPKIFISGTVNGLRSSPFFIQRFKEVMFHYSSMFDMLDANIPRDNE 640 ***************************************986.9****************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+++Er+l+gr++ + +ace ae ++r+e++++W++r+ +aGF+++p++ + k++ + + +++ e+ g+l++gWk+r ++++S W+ TRIUR3_00725-P1 641 ARKTIERVLFGRDALKSIACEDAEWTKRRESYRQWQARFLKAGFQQLPVDPAILKKIVQKKNSLYHEEFFAVEDCGWLLQGWKGRVIYAISKWK 734 *****************************************************99999999899999********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.816	337	714	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.7E-99	363	734	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence Send to blast
ICCGPKKNHI SHIEVENRLS RMAIEPLRDN LDGIAATDQP NDSDSSSQQQ LTVYNYDPSG 60 PHSTVLNPAN QPSTYLLGGV TSPGFCSVNS SLGQNQVQIA AGGSPEHRQI RSNDALHYIS 120 QMIMEDVDER VDICQGEAAL QAAEKPFRDI LGEVYVPATN WSPLHGNNKP ENSDKSGTTG 180 FSNDYSSYNV LQPLATPLSP YTCNRSLFLP DHPLVSVGPT SRSGFFPALH CQRDVEEEKM 240 FAPSIDKLVI YLKNGVLYIS QLTTKVKVVE RSENAIFEVA DQRGWDIFQG RSNKHHAITT 300 CAIIRNENFD QVLLCYGRKS FDRRTRLREK MAGEGTNNSL KGRSKGRLKL WQRKQPRREL 360 VDLRTLLVNC AQAVAEHDHL VASELLKKIR QHSSADGGCT QRLAFYLADG LEARLAGIGS 420 QVYRNLMERR TSTTDWLDAC SHFHASCPFD RASYHFASQA ILGVSQGQPR VHIVDFGIGF 480 GLQWPLMIQR FSQQEEGAPK LRITGIDIPQ PGLHPCEMIE ETGKRLADYA NMFKVPFQYQ 540 GIAASRWETI KIEDLNIEEG EVLIINCMFR MKNLGHETIA INSTRDEVIK TMRMNPKIFI 600 SGTVNGLRSS PFFIQRFKEV MFHYSSMFDM LDANIPRDNE ARKTIERVLF GRDALKSIAC 660 EDAEWTKRRE SYRQWQARFL KAGFQQLPVD PAILKKIVQK KNSLYHEEFF AVEDCGWLLQ 720 GWKGRVIYAI SKWKPDETY

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence Send to blast

ICCGPKKNHI SHIEVENRLS RMAIEPLRDN LDGIAATDQP NDSDSSSQQQ LTVYNYDPSG  60
PHSTVLNPAN QPSTYLLGGV TSPGFCSVNS SLGQNQVQIA AGGSPEHRQI RSNDALHYIS  120
QMIMEDVDER VDICQGEAAL QAAEKPFRDI LGEVYVPATN WSPLHGNNKP ENSDKSGTTG  180
FSNDYSSYNV LQPLATPLSP YTCNRSLFLP DHPLVSVGPT SRSGFFPALH CQRDVEEEKM  240
FAPSIDKLVI YLKNGVLYIS QLTTKVKVVE RSENAIFEVA DQRGWDIFQG RSNKHHAITT  300
CAIIRNENFD QVLLCYGRKS FDRRTRLREK MAGEGTNNSL KGRSKGRLKL WQRKQPRREL  360
VDLRTLLVNC AQAVAEHDHL VASELLKKIR QHSSADGGCT QRLAFYLADG LEARLAGIGS  420
QVYRNLMERR TSTTDWLDAC SHFHASCPFD RASYHFASQA ILGVSQGQPR VHIVDFGIGF  480
GLQWPLMIQR FSQQEEGAPK LRITGIDIPQ PGLHPCEMIE ETGKRLADYA NMFKVPFQYQ  540
GIAASRWETI KIEDLNIEEG EVLIINCMFR MKNLGHETIA INSTRDEVIK TMRMNPKIFI  600
SGTVNGLRSS PFFIQRFKEV MFHYSSMFDM LDANIPRDNE ARKTIERVLF GRDALKSIAC  660
EDAEWTKRRE SYRQWQARFL KAGFQQLPVD PAILKKIVQK KNSLYHEEFF AVEDCGWLLQ  720
GWKGRVIYAI SKWKPDETY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-39	367	734	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198293.1	0.0	scarecrow-like protein 30
TrEMBL	T1L8F6	0.0	T1L8F6_TRIUA; Uncharacterized protein
STRING	TRIUR3_00725-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-137	GRAS family protein