PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_00447-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 347aa MW: 39284 Da PI: 8.5566

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_00447-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.3	6.1e-53	14	141	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee++++y +kv ++ + + +i++v+++k+ePw+Lp+k+k +ekewyf+s++d+ky+tg r+nrat++gyWkatgkdke+++ TRIUR3_00447-P1 14 LPPGFRFHPTDEEIIKFYVVPKVLDEAFVA-AAIEDVNLNKYEPWELPEKAKMGEKEWYFYSRKDRKYPTGIRTNRATEAGYWKATGKDKEIFQ 106 79***********************998.78***********99999************************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +l+g+kktLvfykgrap+gekt+W+mheyrle TRIUR3_00447-P1 107 PPFKLIGMKKTLVFYKGRAPRGEKTNWIMHEYRLE 141 *******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-59	5	176	IPR003441	NAC domain
PROSITE profile	PS51005	57.46	14	176	IPR003441	NAC domain
Pfam	PF02365	1.8E-26	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MADHLQVQQK QLVLPPGFRF HPTDEEIIKF YVVPKVLDEA FVAAAIEDVN LNKYEPWELP 60 EKAKMGEKEW YFYSRKDRKY PTGIRTNRAT EAGYWKATGK DKEIFQPPFK LIGMKKTLVF 120 YKGRAPRGEK TNWIMHEYRL ESSKKLTSNP SITTRTVTRT NMASKEQWVV CRIFHKSTGL 180 KKMVTPSYDM PMYTGAEHQQ GFVDLDTLPP LMEYDMSSTC AHAPLFPGAS SYKSHDVGTG 240 SSMMGSVALP MMNYHYIGNN HHHQMMVNPT LPLSLYQHQQ QHQQMMMHMG ADQGLMVGAQ 300 PGGGLASMLS QEDAVAGLRN NYPGNTAATA VGETSLMNMG MDDIWQN

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MADHLQVQQK QLVLPPGFRF HPTDEEIIKF YVVPKVLDEA FVAAAIEDVN LNKYEPWELP  60
EKAKMGEKEW YFYSRKDRKY PTGIRTNRAT EAGYWKATGK DKEIFQPPFK LIGMKKTLVF  120
YKGRAPRGEK TNWIMHEYRL ESSKKLTSNP SITTRTVTRT NMASKEQWVV CRIFHKSTGL  180
KKMVTPSYDM PMYTGAEHQQ GFVDLDTLPP LMEYDMSSTC AHAPLFPGAS SYKSHDVGTG  240
SSMMGSVALP MMNYHYIGNN HHHQMMVNPT LPLSLYQHQQ QHQQMMMHMG ADQGLMVGAQ  300
PGGGLASMLS QEDAVAGLRN NYPGNTAATA VGETSLMNMG MDDIWQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-51	2	182	1	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-51	2	182	1	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-51	2	182	1	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-51	2	182	1	171	NO APICAL MERISTEM PROTEIN
4dul_A	8e-51	2	182	1	171	NAC domain-containing protein 19
4dul_B	8e-51	2	182	1	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095959	2e-35	FP095959.1 Phyllostachys edulis cDNA clone: bphylf054m05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197195.1	0.0	NAC domain-containing protein 92-like isoform X1
Swissprot	Q9FK44	2e-74	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	T1L7P7	0.0	T1L7P7_TRIUA; Uncharacterized protein
STRING	TRIUR3_00447-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	4e-77	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]