PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9914
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 186aa    MW: 20883.9 Da    PI: 5.1935
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9914genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.2e-222065449
                              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              ++   rqvtfskRr+g++KKA+ELS+LC+aeva+++fs+ +k y +
  Tp57577_TGAC_v2_mRNA9914 20 KDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSF 65
                              56678**********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-34968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.366969IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-28981IPR002100Transcription factor, MADS-box
CDDcd001203.05E-301068No hitNo description
PRINTSPR004049.6E-201131IPR002100Transcription factor, MADS-box
PfamPF003191.3E-252065IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
LCETSERIMG RRKIKIEIVK DPNTRQVTFS KRRTGLFKKA NELSILCGAE VAIVVFSPGN  60
KPYSFGHPGV DVVAAKYLQQ DPEPSDSQGE LSSDASNIDN LNLELAEVLA EIREGEKQAE  120
IYDEILKQND VTTLSELEEL RDSCKRLQDW VKLCLSDIEI SEYMMLLAKE PVVGVKATKK  180
NRRRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18988179MEF2C
5f28_B3e-18988179MEF2C
5f28_C3e-18988179MEF2C
5f28_D3e-18988179MEF2C
6byy_A2e-18988179MEF2 CHIMERA
6byy_B2e-18988179MEF2 CHIMERA
6byy_C2e-18988179MEF2 CHIMERA
6byy_D2e-18988179MEF2 CHIMERA
6bz1_A3e-18988179MEF2 CHIMERA
6bz1_B3e-18988179MEF2 CHIMERA
6bz1_C3e-18988179MEF2 CHIMERA
6bz1_D3e-18988179MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9914
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221607e-80AC122160.21 Medicago truncatula chromosome 8 clone mth2-23d6, complete sequence.
GenBankAC1595377e-80AC159537.24 Medicago truncatula chromosome 8 clone mth2-188k3, complete sequence.
GenBankAC1691207e-80AC169120.12 Medicago truncatula chromosome 8 clone mth2-84o2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467229.11e-101agamous-like MADS-box protein AGL29
TrEMBLA0A2K3LRY01e-127A0A2K3LRY0_TRIPR; Agamous-like mads-box protein agl61-like
STRINGXP_004504539.12e-93(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-35AGAMOUS-like 29